myRT

myRT report for GCA_013302455.1_ASM1330245v1

Download annotations/find similar RTs

Seq: JAAIQB010000010.1 Anaerostipes hadrus strain MSK.15.37 NODE_10_length_85584_cov_230.339, whole genome shotgun sequence (85584 bp)
Overview 1 RT 1: 44803-55051 bp Neighborhood of RT #1 [44803, 55053] TraC-F-type RVT-GII VirB4_CagE RVT-GII HNHc Maff2 Feature: gene Location: 44803-45129 bp Feature: gene Location: 45209-45670 bp Feature: domain Description: TraC-F-type Location: 45275-45515 bp Feature: domain Description: TraC-F-type Location: 45275-4551 5 bp Feature: gene Location: 45714-47714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46101-46839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461 01 -46839 bp Feature: gene Location: 48072-48203 bp Feature: gene Location: 48361-50805 bp Feature: domain Description: VirB4_CagE Location: 49543-50782 bp Feature: domain Description: VirB4_CagE Location: 49543-50782 bp Feature: gene Location: 51175-52044 bp Feature: gene Location: 52048-52239 bp Feature: gene Location: 52316-54202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52649-53387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52649-53387 bp Feature: domain Description: HNHc Note: nucleases Location: 53933-54086 bp Feature: domain Description: HNHc Note: nucleases Location: 53933-54086 bp Feature: gene Location: 54245-54505 bp Feature: gene Location: 54922-55053 bp Feature: domain Description: Maff2 Location: 54925-55051 bp Feature: domain Description: Maff2 Location: 54925-55051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, VirB4_CagE (TIGR00929), HNHc (smart00507), Maff2 (pfam12750)

Seq: JAAIQB010000017.1 Anaerostipes hadrus strain MSK.15.37 NODE_17_length_68956_cov_232.97, whole genome shotgun sequence (68956 bp)
Overview 1 RT 1: 16036-19666 bp Neighborhood of RT #1 [16036, 19872] Phage_XkdX RVT-DGRs SH3_3 Feature: gene Location: 16036-16188 bp Feature: domain Description: Phage_XkdX Location: 16057-16168 bp Feature: domain Description: Phage_XkdX Location: 16057-16168 bp Feature: gene Location: 16190-16516 bp Feature: gene Location: 16425-17810 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16638-17379 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16638-17379 bp Feature: gene Location: 18175-19470 bp Feature: gene Location: 19474-19872 bp Feature: domain Description: SH3_3 Location: 19513-19666 bp Feature: domain Description: SH3_3 Location: 19513-19666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, SH3_3 (pfam08239)

Seq: JAAIQB010000002.1 Anaerostipes hadrus strain MSK.15.37 NODE_2_length_218403_cov_294.513, whole genome shotgun sequence (218403 bp)
Overview 1 RT 1: 94330-99506 bp Neighborhood of RT #1 [94330, 99622] Maff2 RVT-GII Intron_maturas2 VirD4 VirD4 DUF3801 Feature: gene Location: 94330-94545 bp Feature: domain Description: Maff2 Location: 94333-94540 bp Feature: domain Description: Maff2 Location: 943 3 3 -94540 bp Feature: gene Location: 94789-95133 bp Feature: gene Location: 95301-97130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95583-96411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95583 -96411 bp Feature: domain Description: Intron_maturas2 Location: 96495-96837 bp Feature: domain Description: Intron_maturas2 Location: 96495-9683 7 bp Feature: gene Location: 97680-99149 bp Feature: domain Description: VirD4 Location: 97935-98247 bp Feature: domain Description: VirD4 Location: 9793 5-98247 bp Feature: domain Description: VirD4 Location: 98316-99120 bp Feature: domain Description: VirD4 Location: 983 16-99120 bp Feature: gene Location: 99146-99622 bp Feature: domain Description: DUF3801 Location: 99221-99506 bp Feature: domain Description: DUF3 801 Location: 99221-99506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505), DUF3801 (pfam12687)

Seq: JAAIQB010000051.1 Anaerostipes hadrus strain MSK.15.37 NODE_51_length_12214_cov_150.376, whole genome shotgun sequence (12214 bp)
Overview 1 RT 1: 3495-6813 bp Neighborhood of RT #1 [3495, 6813] DUF4160 RVT-UG2 NT_Rel-Spo_like Feature: gene Location: 3495-3764 bp Feature: gene Location: 3748-4026 bp Feature: domain Description: DUF4160 Location: 3778-3991 bp Feature: domain Description: DUF4 160 Location: 3778-3991 bp Feature: gene Location: 4314-5612 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4500-5313 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4 500-5313 bp Feature: gene Location: 5976-6569 bp Feature: domain Description: NT_Rel-Spo_like Location: 6135-6399 bp Feature: domain Description: NT_Rel-Spo_like Location: 6135-6399 bp Feature: gene Location: 6562-6813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4160 (pfam13711), RVT-UG2, NT_Rel-Spo_like (cd05399)

Seq: JAAIQB010000006.1 Anaerostipes hadrus strain MSK.15.37 NODE_6_length_134783_cov_194.132, whole genome shotgun sequence (134783 bp)
Overview 1 RT 1: 133019-134620 bp Neighborhood of RT #1 [133019, 134781] RVT-GII GIIM Feature: gene Location: 133019-133570 bp Feature: gene Location: 133583-133720 bp Feature: gene Location: 133984-134781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133990-134341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133990-134341 bp Feature: domain Description: GIIM Note: maturase Location: 134395-134620 bp Feature: domain Description: GIIM Note: maturase Location: 134395 -134620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIQB010000089.1 Anaerostipes hadrus strain MSK.15.37 NODE_90_length_1070_cov_1063.06, whole genome shotgun sequence (1070 bp)
Overview 1 RT 1: 3-916 bp Neighborhood of RT #1 [3, 916] RVT-GII Feature: gene Location: 3-668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-6 6 9 bp Feature: gene Location: 674-916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII