myRT

myRT report for GCA_013302545.1_ASM1330254v1

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Seq: JAAIQD010000017.1 Anaerostipes hadrus strain MSK.14.9 NODE_17_length_69101_cov_312.188, whole genome shotgun sequence (69101 bp)
Overview 1 RT 1: 16181-19811 bp Neighborhood of RT #1 [16181, 20017] Phage_XkdX RVT-DGRs SH3_3 Feature: gene Location: 16181-16333 bp Feature: domain Description: Phage_XkdX Location: 16202-16313 bp Feature: domain Description: Phage_XkdX Location: 1 6202-1 631 3 bp Feature: gene Location: 16335-16661 bp Feature: gene Location: 16570-17955 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16783-17524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 6783-1 7524 bp Feature: gene Location: 18320-19615 bp Feature: gene Location: 19619-20017 bp Feature: domain Description: SH3_3 Location: 19658-19811 bp Feature: domain Description: SH3_3 Location: 1 9658-1 981 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, SH3_3 (pfam08239)

Seq: JAAIQD010000002.1 Anaerostipes hadrus strain MSK.14.9 NODE_2_length_219390_cov_400.348, whole genome shotgun sequence (219390 bp)
Overview 1 RT 1: 95317-100493 bp Neighborhood of RT #1 [95317, 100609] Maff2 RVT-GII Intron_maturas2 VirD4 VirD4 DUF3801 Feature: gene Location: 95317-95532 bp Feature: domain Description: Maff2 Location: 95320-95527 bp Feature: domain Description: Maff2 Location: 9532 0-9552 7 bp Feature: gene Location: 95776-96120 bp Feature: gene Location: 96288-98117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96570-97398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96570-97398 bp Feature: domain Description: Intron_maturas2 Location: 97482-97824 bp Feature: domain Description: Intron_maturas2 Location: 97482 -9782 4 bp Feature: gene Location: 98667-100136 bp Feature: domain Description: VirD4 Location: 98922-99234 bp Feature: domain Description: VirD4 Location: 9892 2 -992 34 bp Feature: domain Description: VirD4 Location: 99303-100107 bp Feature: domain Description: VirD4 Location: 99303-100107 bp Feature: gene Location: 100133-100609 bp Feature: domain Description: DUF3801 Location: 100208-100493 bp Feature: domain Description: DUF3801 Location: 1002 08-100493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505), DUF3801 (pfam12687)

Seq: JAAIQD010000050.1 Anaerostipes hadrus strain MSK.14.9 NODE_50_length_12216_cov_206.694, whole genome shotgun sequence (12216 bp)
Overview 1 RT 1: 3497-6815 bp Neighborhood of RT #1 [3497, 6815] DUF4160 RVT-UG2 NT_Rel-Spo_like Feature: gene Location: 3497-3766 bp Feature: gene Location: 3750-4028 bp Feature: domain Description: DUF4160 Location: 3780-3993 bp Feature: domain Description: DUF4160 Location: 3 780-3 993 bp Feature: gene Location: 4316-5614 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4502-5315 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4502-53 15 bp Feature: gene Location: 5978-6571 bp Feature: domain Description: NT_Rel-Spo_like Location: 6137-6401 bp Feature: domain Description: NT_Rel-Spo_like Location: 613 7-6401 bp Feature: gene Location: 6564-6815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4160 (pfam13711), RVT-UG2, NT_Rel-Spo_like (cd05399)

Seq: JAAIQD010000075.1 Anaerostipes hadrus strain MSK.14.9 NODE_76_length_1895_cov_1076.52, whole genome shotgun sequence (1895 bp)
Overview 1 RT 1: 227-1654 bp Neighborhood of RT #1 [227, 1815] RVT-GII GIIM Feature: gene Location: 227-406 bp Feature: gene Location: 403-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754 -1375 bp Feature: domain Description: GIIM Note: maturase Location: 1429-1654 bp Feature: domain Description: GIIM Note: maturase Location: 14 29-1654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIQD010000008.1 Anaerostipes hadrus strain MSK.14.9 NODE_8_length_118271_cov_287.091, whole genome shotgun sequence (118271 bp)
Overview 1 RT 1: 44803-55051 bp Neighborhood of RT #1 [44803, 55053] TraC-F-type RVT-GII VirB4_CagE RVT-GII HNHc Maff2 Feature: gene Location: 44803-45129 bp Feature: gene Location: 45209-45670 bp Feature: domain Description: TraC-F-type Location: 45275-45515 bp Feature: domain Description: TraC-F-type Location: 45 275 -45 5 15 bp Feature: gene Location: 45714-47714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46101-46839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46101-46839 bp Feature: gene Location: 48072-48203 bp Feature: gene Location: 48361-50805 bp Feature: domain Description: VirB4_CagE Location: 49543-50782 bp Feature: domain Description: VirB4_CagE Location: 495 43-5 0782 bp Feature: gene Location: 51175-52044 bp Feature: gene Location: 52048-52239 bp Feature: gene Location: 52316-54202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52649-53387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 2649-5 3387 bp Feature: domain Description: HNHc Note: nucleases Location: 53933-54086 bp Feature: domain Description: HNHc Note: nucleases Location: 5 3933-5 4086 bp Feature: gene Location: 54245-54505 bp Feature: gene Location: 54922-55053 bp Feature: domain Description: Maff2 Location: 54925-55051 bp Feature: domain Description: Maff2 Location: 5 4925 -5 5 05 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, VirB4_CagE (TIGR00929), HNHc (smart00507), Maff2 (pfam12750)