myRT

myRT report for GCA_013302565.1_ASM1330256v1

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Seq: JAAIQG010000016.1 Anaerostipes hadrus strain MSK.14.29 NODE_16_length_71150_cov_235.075, whole genome shotgun sequence (71150 bp)
Overview 1 RT 1: 51536-54950 bp Neighborhood of RT #1 [51536, 54970] RVT-DGRs Phage_XkdX Feature: gene Location: 51536-52831 bp Feature: gene Location: 52925-53089 bp Feature: gene Location: 53196-54581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53409-54150 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53409-541 50 bp Feature: gene Location: 54490-54816 bp Feature: gene Location: 54818-54970 bp Feature: domain Description: Phage_XkdX Location: 54839-54950 bp Feature: domain Description: Phage_XkdX Location: 54839-54950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: JAAIQG010000017.1 Anaerostipes hadrus strain MSK.14.29 NODE_17_length_69936_cov_220.618, whole genome shotgun sequence (69936 bp)
Overview 1 RT 1: 61188-67097 bp Neighborhood of RT #1 [61188, 67097] VirD4 Maff2 RVT-GII HNHc Feature: gene Location: 61188-63083 bp Feature: domain Description: VirD4 Location: 61464-62913 bp Feature: domain Description: VirD4 Location: 61464-62 913 bp Feature: gene Location: 63219-63350 bp Feature: domain Description: Maff2 Location: 63222-63348 bp Feature: domain Description: Maff2 Location: 632 2 2 -63348 bp Feature: gene Location: 64070-65956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64403-65141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64403-65141 bp Feature: domain Description: HNHc Note: nucleases Location: 65687-65840 bp Feature: domain Description: HNHc Note: nucleases Location: 65687-65840 bp Feature: gene Location: 66033-66224 bp Feature: gene Location: 66228-67097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: JAAIQG010000052.1 Anaerostipes hadrus strain MSK.14.29 NODE_52_length_12216_cov_142.733, whole genome shotgun sequence (12216 bp)
Overview 1 RT 1: 3497-6815 bp Neighborhood of RT #1 [3497, 6815] DUF4160 RVT-UG2 NT_Rel-Spo_like Feature: gene Location: 3497-3766 bp Feature: gene Location: 3750-4028 bp Feature: domain Description: DUF4160 Location: 3780-3993 bp Feature: domain Description: DUF4160 Location: 3 780-3 993 bp Feature: gene Location: 4316-5614 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4502-5315 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4502-53 15 bp Feature: gene Location: 5978-6571 bp Feature: domain Description: NT_Rel-Spo_like Location: 6137-6401 bp Feature: domain Description: NT_Rel-Spo_like Location: 613 7-6401 bp Feature: gene Location: 6564-6815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4160 (pfam13711), RVT-UG2, NT_Rel-Spo_like (cd05399)

Seq: JAAIQG010000077.1 Anaerostipes hadrus strain MSK.14.29 NODE_78_length_2785_cov_544.082, whole genome shotgun sequence (2785 bp)
Overview 1 RT 1: 109-2783 bp Neighborhood of RT #1 [109, 2783] RVT-GII Feature: gene Location: 109-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 96-1234 bp Feature: gene Location: 2467-2598 bp Feature: gene Location: 2625-2783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIQG010000083.1 Anaerostipes hadrus strain MSK.14.29 NODE_84_length_2518_cov_577.583, whole genome shotgun sequence (2518 bp)
Overview 1 RT 1: 336-2116 bp Neighborhood of RT #1 [336, 2409] RVT-GII Intron_maturas2 Feature: gene Location: 336-467 bp Feature: gene Location: 580-2409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862-1690 bp Feature: domain Description: Intron_maturas2 Location: 1774-2116 bp Feature: domain Description: Intron_maturas2 Location: 1774-2116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: JAAIQG010000085.1 Anaerostipes hadrus strain MSK.14.29 NODE_87_length_1895_cov_1033.1, whole genome shotgun sequence (1895 bp)
Overview 1 RT 1: 227-1654 bp Neighborhood of RT #1 [227, 1815] RVT-GII GIIM Feature: gene Location: 227-406 bp Feature: gene Location: 403-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 754-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1429-1654 bp Feature: domain Description: GIIM Note: maturase Location: 1429-16 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)