myRT

myRT report for GCA_013303435.1_ASM1330343v1

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Seq: JAAIRH010000133.1 [Ruminococcus] gnavus strain MSK.23.56 NODE_134_length_2745_cov_500.855, whole genome shotgun sequence (2745 bp)
Overview 1 RT 1: 2-1778 bp Neighborhood of RT #1 [2, 2614] RVT-GII Feature: gene Location: 2-163 bp Feature: gene Location: 704-2614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 034-1 778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIRH010000134.1 [Ruminococcus] gnavus strain MSK.23.56 NODE_135_length_2682_cov_375.892, whole genome shotgun sequence (2682 bp)
Overview 1 RT 1: 112-1069 bp Neighborhood of RT #1 [112, 1896] RVT-GII Feature: gene Location: 112-1896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIRH010000016.1 [Ruminococcus] gnavus strain MSK.23.56 NODE_16_length_63036_cov_332.404, whole genome shotgun sequence (63036 bp)
Overview 1 RT 1: 49542-52956 bp Neighborhood of RT #1 [49542, 52976] RVT-DGRs Phage_XkdX Feature: gene Location: 49542-50837 bp Feature: gene Location: 50931-51095 bp Feature: gene Location: 51202-52587 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51415-52159 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51415-52159 bp Feature: gene Location: 52496-52822 bp Feature: gene Location: 52824-52976 bp Feature: domain Description: Phage_XkdX Location: 52845-52956 bp Feature: domain Description: Phage_XkdX Location: 52845-52956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: JAAIRH010000077.1 [Ruminococcus] gnavus strain MSK.23.56 NODE_77_length_8499_cov_96.779, whole genome shotgun sequence (8499 bp)
Overview 1 RT 1: 1069-8370 bp Neighborhood of RT #1 [1069, 8378] MelB ebgA RVT-GII GIIM DUF4300 PRK10572 Feature: gene Location: 1069-2448 bp Feature: domain Description: MelB Location: 1078-2422 bp Feature: domain Description: MelB Location: 1078-24 22 bp Feature: gene Location: 2455-5520 bp Feature: domain Description: ebgA Location: 2473-5506 bp Feature: domain Description: ebgA Location: 24 73-5506 bp Feature: gene Location: 5741-6373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5747-5888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574 7-5888 bp Feature: domain Description: GIIM Note: maturase Location: 5942-6158 bp Feature: domain Description: GIIM Note: maturase Location: 594 2-6158 bp Feature: gene Location: 6520-7365 bp Feature: domain Description: DUF4300 Location: 6616-7360 bp Feature: domain Description: DUF4 300 Location: 6616-7360 bp Feature: gene Location: 7527-8378 bp Feature: domain Description: PRK10572 Location: 7653-8370 bp Feature: domain Description: PRK10572 Location: 7653-8370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MelB (COG2211), ebgA (PRK10340), RVT-GII, GIIM (pfam08388), DUF4300 (pfam14133), PRK10572 (arabinose operon transcriptional regulator AraC)