myRT

myRT report for GCA_013303465.1_ASM1330346v1

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Seq: JAAIRI010000023.1 [Ruminococcus] gnavus strain MSK.23.55 NODE_23_length_63036_cov_354.937, whole genome shotgun sequence (63036 bp)
Overview 1 RT 1: 49542-52956 bp Neighborhood of RT #1 [49542, 52976] RVT-DGRs Phage_XkdX Feature: gene Location: 49542-50837 bp Feature: gene Location: 50931-51095 bp Feature: gene Location: 51202-52587 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51415-52159 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51 41 5-521 59 bp Feature: gene Location: 52496-52822 bp Feature: gene Location: 52824-52976 bp Feature: domain Description: Phage_XkdX Location: 52845-52956 bp Feature: domain Description: Phage_XkdX Location: 52845-52956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: JAAIRI010000026.1 [Ruminococcus] gnavus strain MSK.23.55 NODE_26_length_55002_cov_135.94, whole genome shotgun sequence (55002 bp)
Overview 1 RT 1: 41195-48478 bp Neighborhood of RT #1 [41195, 48504] PRK10572 DUF4300 RVT-GII GIIM ebgA MelB Feature: gene Location: 41195-42046 bp Feature: domain Description: PRK10572 Location: 41321-42038 bp Feature: domain Description: PRK10572 Location: 4132 1-42 038 bp Feature: gene Location: 42208-43053 bp Feature: domain Description: DUF4300 Location: 42304-43048 bp Feature: domain Description: DUF4300 Location: 42 304-43048 bp Feature: gene Location: 43242-43832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43248-43347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432 48-43347 bp Feature: domain Description: GIIM Note: maturase Location: 43401-43617 bp Feature: domain Description: GIIM Note: maturase Location: 43401-43617 bp Feature: gene Location: 44053-47118 bp Feature: domain Description: ebgA Location: 44071-47104 bp Feature: domain Description: ebgA Location: 44071-47104 bp Feature: gene Location: 47125-48504 bp Feature: domain Description: MelB Location: 47134-48478 bp Feature: domain Description: MelB Location: 47134-48478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10572 (arabinose operon transcriptional regulator AraC), DUF4300 (pfam14133), RVT-GII, GIIM (pfam08388), ebgA (PRK10340), MelB (COG2211)

Seq: JAAIRI010000089.1 [Ruminococcus] gnavus strain MSK.23.55 NODE_90_length_2745_cov_606.042, whole genome shotgun sequence (2745 bp)
Overview 1 RT 1: 2-1778 bp Neighborhood of RT #1 [2, 2614] RVT-GII Feature: gene Location: 2-163 bp Feature: gene Location: 704-2614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034-1778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 4-1778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAIRI010000090.1 [Ruminococcus] gnavus strain MSK.23.55 NODE_91_length_2682_cov_649.285, whole genome shotgun sequence (2682 bp)
Overview 1 RT 1: 745-1744 bp Neighborhood of RT #1 [745, 2571] RVT-GII Feature: gene Location: 745-2571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104 5-174 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII