myRT

myRT report for GCA_013303625.1_ASM1330362v1

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Seq: JAAIRR010000029.1 [Ruminococcus] gnavus strain MSK.15.77 NODE_29_length_38355_cov_274.074, whole genome shotgun sequence (38355 bp)
Overview 1 RT 1: 16874-23201 bp Neighborhood of RT #1 [16874, 23201] DUF3847 Ssb RVT-GII GIIM RVT-GII SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 group_II_RT_mat Feature: gene Location: 16874-17545 bp Feature: domain Description: DUF3847 Location: 17174-17411 bp Feature: domain Description: DUF3847 Location: 1 71 74-1 741 1 bp Feature: gene Location: 17499-17903 bp Feature: domain Description: Ssb Location: 17502-17841 bp Feature: domain Description: Ssb Location: 1 7502-1 7841 bp Feature: gene Location: 18180-19571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18495-19119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8495-1 91 1 9 bp Feature: domain Description: GIIM Note: maturase Location: 19176-19392 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 76-1 9392 bp Feature: gene Location: 19609-19764 bp Feature: gene Location: 20163-20594 bp Feature: gene Location: 20707-22524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20716-21016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071 6-21 01 6 bp Feature: domain Description: SR_TndX_transposase Location: 21016-21352 bp Feature: domain Description: SR_TndX_transposase Location: 21 01 6-21 352 bp Feature: domain Description: Recombinase Location: 21454-21832 bp Feature: domain Description: Recombinase Location: 21 454-21 832 bp Feature: domain Description: Zn_ribbon_recom Location: 21868-22048 bp Feature: domain Description: Zn_ribbon_recom Location: 21 868-22048 bp Feature: domain Description: DUF4368 Location: 22327-22522 bp Feature: domain Description: DUF4368 Location: 22327-22522 bp Feature: gene Location: 22537-22719 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 22570-22717 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 22570-2271 7 bp Feature: gene Location: 22818-23201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3847 (pfam12958), Ssb (COG0629), RVT-GII, GIIM (pfam08388), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), group_II_RT_mat (TIGR04416)

Seq: JAAIRR010000069.1 [Ruminococcus] gnavus strain MSK.15.77 NODE_69_length_8274_cov_230.67, whole genome shotgun sequence (8274 bp)
Overview 1 RT 1: 2960-6963 bp Neighborhood of RT #1 [2960, 6974] RlmN RVT-GII GIIM sigma70-ECF HTH_16 Feature: gene Location: 2960-3943 bp Feature: domain Description: RlmN Location: 3104-3929 bp Feature: domain Description: RlmN Location: 3104-392 9 bp Feature: gene Location: 4370-4624 bp Feature: gene Location: 4732-6126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5050-5674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5050-5674 bp Feature: domain Description: GIIM Note: maturase Location: 5731-5941 bp Feature: domain Description: GIIM Note: maturase Location: 5731-5941 bp Feature: gene Location: 6323-6760 bp Feature: domain Description: sigma70-ECF Location: 6473-6731 bp Feature: domain Description: sigma70-ECF Location: 6473-6731 bp Feature: gene Location: 6744-6974 bp Feature: domain Description: HTH_16 Location: 6786-6963 bp Feature: domain Description: HTH_16 Location: 6786-6963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RlmN (COG0820), RVT-GII, GIIM (pfam08388), sigma70-ECF (TIGR02937), HTH_16 (pfam12645)