myRT

myRT report for GCA_013303845.1_ASM1330384v1

Download annotations/find similar RTs

Seq: JAAIRZ010000022.1 [Eubacterium] rectale strain MSK.9.15 NODE_22_length_58246_cov_355.739, whole genome shotgun sequence (58246 bp)
Overview 1 RT 1: 36959-44466 bp Neighborhood of RT #1 [36959, 44531] Maff2 VirD4 RVT-GII RVT-GII VirD4 Feature: gene Location: 36959-37117 bp Feature: domain Description: Maff2 Location: 36962-37112 bp Feature: domain Description: Maff2 Location: 36962-371 1 2 bp Feature: gene Location: 37246-38304 bp Feature: domain Description: VirD4 Location: 37381-38170 bp Feature: domain Description: VirD4 Location: 37381 -381 70 bp Feature: gene Location: 38451-40358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38781-39525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38781 -39525 bp Feature: gene Location: 40381-40626 bp Feature: gene Location: 41328-43202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41646-42390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 646-42390 bp Feature: gene Location: 43190-43513 bp Feature: gene Location: 43824-44531 bp Feature: domain Description: VirD4 Location: 44079-44466 bp Feature: domain Description: VirD4 Location: 44079-44466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), VirD4 (COG3505), RVT-GII

Seq: JAAIRZ010000029.1 [Eubacterium] rectale strain MSK.9.15 NODE_29_length_34094_cov_244.871, whole genome shotgun sequence (34094 bp)
Overview 1 RT 1: 13362-15968 bp Neighborhood of RT #1 [13362, 15973] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 13362-13583 bp Feature: domain Description: Phage_holin_Dp1 Location: 13380-13566 bp Feature: domain Description: Phage_holin_Dp1 Location: 13380-13566 bp Feature: gene Location: 13564-13908 bp Feature: gene Location: 13921-15126 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14116-14839 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14116-14839 bp Feature: gene Location: 15336-15833 bp Feature: gene Location: 15833-15973 bp Feature: domain Description: Phage_XkdX Location: 15854-15968 bp Feature: domain Description: Phage_XkdX Location: 15854-15968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: JAAIRZ010000003.1 [Eubacterium] rectale strain MSK.9.15 NODE_3_length_184191_cov_274.592, whole genome shotgun sequence (184191 bp)
Overview 1 RT 1: 84928-88455 bp Neighborhood of RT #1 [84928, 88544] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 84928-86070 bp Feature: domain Description: PHA00653 Location: 85051-86068 bp Feature: domain Description: PHA00653 Location: 85051-86068 bp Feature: gene Location: 86111-86467 bp Feature: domain Description: Avd_like Location: 86141-86447 bp Feature: domain Description: Avd_like Location: 86141-86447 bp Feature: gene Location: 86794-87855 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 87031-87652 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8703 1-87652 bp Feature: gene Location: 87880-88059 bp Feature: gene Location: 88056-88544 bp Feature: domain Description: Phage_holin_4_1 Location: 88095-88455 bp Feature: domain Description: Phage_holin_4_1 Location: 88095-88455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: JAAIRZ010000008.1 [Eubacterium] rectale strain MSK.9.15 NODE_8_length_143532_cov_257.714, whole genome shotgun sequence (143532 bp)
Overview 1 RT 1: 3-5243 bp Neighborhood of RT #1 [3, 5257] RVT-GII GIIM Tra8 pheS Feature: gene Location: 3-440 bp Feature: gene Location: 844-987 bp Feature: gene Location: 974-2257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184 -1799 bp Feature: domain Description: GIIM Note: maturase Location: 1859-2078 bp Feature: domain Description: GIIM Note: maturase Location: 1859-2078 bp Feature: gene Location: 2585-3625 bp Feature: domain Description: Tra8 Location: 2600-3611 bp Feature: domain Description: Tra8 Location: 2600-3611 bp Feature: gene Location: 4232-5257 bp Feature: domain Description: pheS Location: 4238-5243 bp Feature: domain Description: pheS Location: 4 238-524 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), pheS (TIGR00468), RVT-GII, GIIM (pfam08388)