myRT

myRT report for GCA_013303985.1_ASM1330398v1

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Seq: JAAISL010000013.1 [Clostridium] symbiosum strain MSK.7.21 NODE_13_length_76200_cov_201.559, whole genome shotgun sequence (76200 bp)
Overview 1 RT 1: 24250-28863 bp Neighborhood of RT #1 [24250, 28868] T4SS-DNA_transf RVT-GII Intron_maturas2 TraG-D_C Maff2 Feature: gene Location: 24250-25509 bp Feature: domain Description: T4SS-DNA_transf Location: 24661-25498 bp Feature: domain Description: T4SS-DNA_transf Location: 24661 -25498 bp Feature: gene Location: 25744-25932 bp Feature: gene Location: 26105-27916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26369-27200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26369-27200 bp Feature: domain Description: Intron_maturas2 Location: 27269-27596 bp Feature: domain Description: Intron_maturas2 Location: 27269-27596 bp Feature: gene Location: 28062-28589 bp Feature: domain Description: TraG-D_C Location: 28065-28356 bp Feature: domain Description: TraG-D_C Location: 28065-28356 bp Feature: gene Location: 28653-28868 bp Feature: domain Description: Maff2 Location: 28656-28863 bp Feature: domain Description: Maff2 Location: 28656-28863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: JAAISL010000158.1 [Clostridium] symbiosum strain MSK.7.21 NODE_158_length_5535_cov_185.605, whole genome shotgun sequence (5535 bp)
Overview 1 RT 1: 156-5269 bp Neighborhood of RT #1 [156, 5271] MviM MviM LysR RVT-Retrons YuiF Feature: gene Location: 156-1340 bp Feature: domain Description: MviM Location: 177-474 bp Feature: domain Description: MviM Location: 177-474 bp Feature: domain Description: MviM Location: 549-1332 bp Feature: domain Description: MviM Location: 549-1332 bp Feature: gene Location: 1662-2606 bp Feature: domain Description: LysR Location: 1701-2559 bp Feature: domain Description: LysR Location: 1701-2 559 bp Feature: gene Location: 2665-3651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2830-3385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 830-3385 bp Feature: gene Location: 3679-3891 bp Feature: gene Location: 3949-5271 bp Feature: domain Description: YuiF Location: 3970-5269 bp Feature: domain Description: YuiF Location: 3970-52 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), LysR (COG0583), RVT-Retrons, YuiF (COG2056)

Seq: JAAISL010000175.1 [Clostridium] symbiosum strain MSK.7.21 NODE_176_length_1940_cov_432.599, whole genome shotgun sequence (1940 bp)
Overview 1 RT 1: 63-1768 bp Neighborhood of RT #1 [63, 1836] RVT-GII GIIM Feature: gene Location: 63-224 bp Feature: gene Location: 538-1836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1483 bp Feature: domain Description: GIIM Note: maturase Location: 1561-1768 bp Feature: domain Description: GIIM Note: maturase Location: 1561-1768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAISL010000176.1 [Clostridium] symbiosum strain MSK.7.21 NODE_177_length_1901_cov_545.735, whole genome shotgun sequence (1901 bp)
Overview 1 RT 1: 73-1732 bp Neighborhood of RT #1 [73, 1732] RVT-GII GIIM Feature: gene Location: 73-1464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1015 bp Feature: domain Description: GIIM Note: maturase Location: 1069-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1069-1297 bp Feature: gene Location: 1577-1732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAISL010000001.1 [Clostridium] symbiosum strain MSK.7.21 NODE_1_length_233313_cov_222.022, whole genome shotgun sequence (233313 bp)
Overview 1 RT 1: 167200-171962 bp Neighborhood of RT #1 [167200, 171970] RVT-GII Intron_maturas2 HNHc VirD4 Maff2 Feature: gene Location: 167200-167706 bp Feature: gene Location: 167961-168227 bp Feature: gene Location: 168266-170083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168530-169349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1685 30-169349 bp Feature: domain Description: Intron_maturas2 Location: 169421-169724 bp Feature: domain Description: Intron_maturas2 Location: 169421-169724 bp Feature: domain Description: HNHc Note: nucleases Location: 169904-170048 bp Feature: domain Description: HNHc Note: nucleases Location: 169904-170048 bp Feature: gene Location: 170174-171532 bp Feature: domain Description: VirD4 Location: 170348-171431 bp Feature: domain Description: VirD4 Location: 170348-171431 bp Feature: gene Location: 171752-171970 bp Feature: domain Description: Maff2 Location: 171755-171962 bp Feature: domain Description: Maff2 Location: 17175 5 -171962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), Maff2 (pfam12750)

Seq: JAAISL010000023.1 [Clostridium] symbiosum strain MSK.7.21 NODE_23_length_56626_cov_203.234, whole genome shotgun sequence (56626 bp)
Overview 1 RT 1: 21299-28026 bp Neighborhood of RT #1 [21299, 28067] DctM DctQ RVT-GII GIIM MATE_SpoVB_like FeS_nifS Feature: gene Location: 21299-21787 bp Feature: domain Description: DctM Location: 21308-21779 bp Feature: domain Description: DctM Location: 21308-21779 bp Feature: gene Location: 21780-23081 bp Feature: domain Description: DctQ Location: 21927-23058 bp Feature: domain Description: DctQ Location: 21927-23058 bp Feature: gene Location: 23568-24959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23883-24507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23883-24507 bp Feature: domain Description: GIIM Note: maturase Location: 24564-24777 bp Feature: domain Description: GIIM Note: maturase Location: 2456 4-24777 bp Feature: gene Location: 25050-26552 bp Feature: domain Description: MATE_SpoVB_like Location: 25083-26340 bp Feature: domain Description: MATE_SpoVB_like Location: 25083-26 340 bp Feature: gene Location: 26874-28067 bp Feature: domain Description: FeS_nifS Location: 26889-28026 bp Feature: domain Description: FeS_nifS Location: 26 889-28026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DctM (pfam06808), DctQ (pfam04290), RVT-GII, GIIM (pfam08388), MATE_SpoVB_like (cd13124), FeS_nifS (TIGR03402)

Seq: JAAISL010000002.1 [Clostridium] symbiosum strain MSK.7.21 NODE_2_length_213253_cov_187.517, whole genome shotgun sequence (213253 bp)
Overview 1 RT 1: 167825-172131 bp Neighborhood of RT #1 [167825, 172139] Spr RVT-GII Intron_maturas2 DUF4315 Feature: gene Location: 167825-169219 bp Feature: domain Description: Spr Location: 168899-169187 bp Feature: domain Description: Spr Location: 168899-169187 bp Feature: gene Location: 169392-169580 bp Feature: gene Location: 169845-171641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170112-170925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 0112-17 0925 bp Feature: domain Description: Intron_maturas2 Location: 171003-171423 bp Feature: domain Description: Intron_maturas2 Location: 17 1003-17 1423 bp Feature: gene Location: 171653-171883 bp Feature: gene Location: 171870-172139 bp Feature: domain Description: DUF4315 Location: 171879-172131 bp Feature: domain Description: DUF4315 Location: 17 187 9-17 2131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), DUF4315 (pfam14193)

Seq: JAAISL010000004.1 [Clostridium] symbiosum strain MSK.7.21 NODE_4_length_123688_cov_213.182, whole genome shotgun sequence (123688 bp)
Overview 1 RT 1: 47059-48761 bp Neighborhood of RT #1 [47059, 48838] RVT-GII HipB Feature: gene Location: 47059-47418 bp Feature: gene Location: 47458-47712 bp Feature: gene Location: 47508-48113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47748-48054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47748 -48 054 bp Feature: gene Location: 48169-48351 bp Feature: gene Location: 48488-48838 bp Feature: domain Description: HipB Location: 48524-48761 bp Feature: domain Description: HipB Location: 48 524-48 761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HipB (COG1396)