myRT

myRT report for GCA_013304055.1_ASM1330405v1

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Seq: JAAISM010000121.1 [Clostridium] symbiosum strain MSK.1.9 NODE_121_length_7288_cov_192.569, whole genome shotgun sequence (7288 bp)
Overview 1 RT 1: 5309-7015 bp Neighborhood of RT #1 [5309, 7083] RVT-GII GIIM Feature: gene Location: 5309-5470 bp Feature: gene Location: 5524-5739 bp Feature: gene Location: 5902-7083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6043-6730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6043-6730 bp Feature: domain Description: GIIM Note: maturase Location: 6808-7015 bp Feature: domain Description: GIIM Note: maturase Location: 6808-701 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAISM010000001.1 [Clostridium] symbiosum strain MSK.1.9 NODE_1_length_241915_cov_163.61, whole genome shotgun sequence (241915 bp)
Overview 1 RT 1: 11021-19356 bp 2 RT 2: 123378-129370 bp Neighborhood of RT #1 [11021, 19356] Virulence_RhuM RVT-Retrons Trypsin_2 SIR2 Piwi_piwi-like_ProArk Neighborhood of RT #2 [123378, 129370] PrgI VirB4_CagE TraC-F-type RVT-GII Intron_maturas2 Feature: gene Location: 11021-11281 bp Feature: gene Location: 11422-12465 bp Feature: domain Description: Virulence_RhuM Location: 11647-12397 bp Feature: domain Description: Virulence_RhuM Location: 11647-12 397 bp Feature: gene Location: 12822-14486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12972-13563 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 972 -13563 bp Feature: domain Description: Trypsin_2 Location: 13980-14391 bp Feature: domain Description: Trypsin_2 Location: 13980-14391 bp Feature: gene Location: 14693-17833 bp Feature: domain Description: SIR2 Location: 14762-15260 bp Feature: domain Description: SIR2 Location: 14762 -152 60 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 16523-17780 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 1652 3-17780 bp Feature: gene Location: 17950-19356 bp Feature: gene Location: 123378-123800 bp Feature: domain Description: PrgI Location: 123426-123699 bp Feature: domain Description: PrgI Location: 12 342 6-12 3699 bp Feature: gene Location: 123754-125901 bp Feature: domain Description: VirB4_CagE Location: 123847-124084 bp Feature: domain Description: VirB4_CagE Location: 12 3847-12 4084 bp Feature: domain Description: TraC-F-type Location: 124522-125863 bp Feature: domain Description: TraC-F-type Location: 12 452 2 -12 5863 bp Feature: gene Location: 126394-128184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126661-127474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 6661-12 7474 bp Feature: domain Description: Intron_maturas2 Location: 127558-127852 bp Feature: domain Description: Intron_maturas2 Location: 12 7558-12 7852 bp Feature: gene Location: 128293-128643 bp Feature: gene Location: 128561-129370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-Retrons, Trypsin_2 (pfam13365), SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659), PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JAAISM010000064.1 [Clostridium] symbiosum strain MSK.1.9 NODE_64_length_26717_cov_180.198, whole genome shotgun sequence (26717 bp)
Overview 1 RT 1: 22725-26511 bp Neighborhood of RT #1 [22725, 26513] LysR RVT-Retrons YuiF Feature: gene Location: 22725-22862 bp Feature: gene Location: 22904-23848 bp Feature: domain Description: LysR Location: 22943-23801 bp Feature: domain Description: LysR Location: 22943 -23 801 bp Feature: gene Location: 23907-24893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24072-24627 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24072-24627 bp Feature: gene Location: 24921-25133 bp Feature: gene Location: 25191-26513 bp Feature: domain Description: YuiF Location: 25212-26511 bp Feature: domain Description: YuiF Location: 25212-26511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-Retrons, YuiF (COG2056)