myRT

myRT report for GCA_013304085.1_ASM1330408v1

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Seq: JAAISN010000002.1 [Clostridium] scindens strain MSK.5.24 NODE_2_length_642187_cov_249.102, whole genome shotgun sequence (642187 bp)
Overview 1 RT 1: 10578-17129 bp Neighborhood of RT #1 [10578, 17137] DUF3801 VirD4 VirD4 RVT-GII SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 TnpV Feature: gene Location: 10578-11054 bp Feature: domain Description: DUF3801 Location: 10653-10938 bp Feature: domain Description: DUF3801 Location: 1 0653-1 0938 bp Feature: gene Location: 11051-11896 bp Feature: domain Description: VirD4 Location: 11306-11618 bp Feature: domain Description: VirD4 Location: 1 1 306-1 1 61 8 bp Feature: domain Description: VirD4 Location: 11690-11858 bp Feature: domain Description: VirD4 Location: 1 1 690-1 1 858 bp Feature: gene Location: 12555-14462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12885-13629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2885-1 3629 bp Feature: gene Location: 14684-16795 bp Feature: domain Description: SR_TndX_transposase Location: 14933-15362 bp Feature: domain Description: SR_TndX_transposase Location: 1 4933-1 5362 bp Feature: domain Description: Recombinase Location: 15458-15818 bp Feature: domain Description: Recombinase Location: 1 5458-1 581 8 bp Feature: domain Description: Zn_ribbon_recom Location: 15863-16049 bp Feature: domain Description: Zn_ribbon_recom Location: 1 5863-1 6049 bp Feature: domain Description: DUF4368 Location: 16325-16520 bp Feature: domain Description: DUF4368 Location: 1 6325-1 6520 bp Feature: gene Location: 16901-17137 bp Feature: domain Description: TnpV Location: 16907-17129 bp Feature: domain Description: TnpV Location: 1 6907-1 71 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), TnpV (pfam14198)

Seq: JAAISN010000004.1 [Clostridium] scindens strain MSK.5.24 NODE_4_length_275067_cov_259.976, whole genome shotgun sequence (275067 bp)
Overview 1 RT 1: 29221-39383 bp Neighborhood of RT #1 [29221, 39383] AAA_5 AAA_5 RVT-GII HNH vWA_norD_type RVT-GII HipB Feature: gene Location: 29221-30777 bp Feature: domain Description: AAA_5 Location: 30088-30229 bp Feature: domain Description: AAA_5 Location: 30088-302 2 9 bp Feature: domain Description: AAA_5 Location: 30502-30751 bp Feature: domain Description: AAA_5 Location: 30502 -30751 bp Feature: gene Location: 31064-31195 bp Feature: gene Location: 31446-33254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31713-32454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31713-32 454 bp Feature: domain Description: HNH Note: nucleases Location: 33033-33114 bp Feature: domain Description: HNH Note: nucleases Location: 33033-33114 bp Feature: gene Location: 33416-33757 bp Feature: gene Location: 33786-36023 bp Feature: domain Description: vWA_norD_type Location: 35499-35958 bp Feature: domain Description: vWA_norD_type Location: 35499-35958 bp Feature: gene Location: 36167-36310 bp Feature: gene Location: 36416-36544 bp Feature: gene Location: 36661-38532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36973-37711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36973-37711 bp Feature: gene Location: 38662-38922 bp Feature: domain Description: HipB Location: 38689-38905 bp Feature: domain Description: HipB Location: 38689-38905 bp Feature: gene Location: 39042-39383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_5 (pfam07728), RVT-GII, HNH (pfam01844), vWA_norD_type (cd01454), HipB (COG1396)

Seq: JAAISN010000005.1 [Clostridium] scindens strain MSK.5.24 NODE_5_length_272680_cov_265.862, whole genome shotgun sequence (272680 bp)
Overview 1 RT 1: 5952-11789 bp Neighborhood of RT #1 [5952, 11806] HTH_XRE HTH_XRE RVT-UG14 guaA MATE_NorM_like Feature: gene Location: 5952-6206 bp Feature: domain Description: HTH_XRE Location: 5994-6171 bp Feature: domain Description: HTH_XRE Location: 5994-6171 bp Feature: gene Location: 6585-7139 bp Feature: domain Description: HTH_XRE Location: 6597-6774 bp Feature: domain Description: HTH_XRE Location: 6597-6774 bp Feature: gene Location: 7136-8689 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 7484-7844 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 7484-7844 bp Feature: gene Location: 8771-10369 bp Feature: domain Description: guaA Location: 8831-10367 bp Feature: domain Description: guaA Location: 883 1-103 67 bp Feature: gene Location: 10439-11806 bp Feature: domain Description: MATE_NorM_like Location: 10499-11789 bp Feature: domain Description: MATE_NorM_like Location: 10499-11789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG14, guaA (PRK00074), MATE_NorM_like (cd13137)