myRT

myRT report for GCA_013304115.1_ASM1330411v1

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Seq: JAAISP010000021.1 [Clostridium] scindens strain MSK.1.16 NODE_21_length_44202_cov_272.93, whole genome shotgun sequence (44202 bp)
Overview 1 RT 1: 32736-38794 bp Neighborhood of RT #1 [32736, 38796] SseA SseA RVT-GII PinE Zn_ribbon_recom Recombinase DUF5372 RVT-GII COG2316 COG2316 Feature: gene Location: 32736-34136 bp Feature: domain Description: SseA Location: 32826-33141 bp Feature: domain Description: SseA Location: 32826-331 41 bp Feature: domain Description: SseA Location: 33294-34095 bp Feature: domain Description: SseA Location: 33294-34095 bp Feature: gene Location: 34387-34557 bp Feature: gene Location: 34874-35035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34982-35030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34982-35030 bp Feature: gene Location: 35111-37156 bp Feature: domain Description: PinE Location: 35177-35864 bp Feature: domain Description: PinE Location: 351 77-35864 bp Feature: domain Description: Zn_ribbon_recom Location: 36125-36299 bp Feature: domain Description: Zn_ribbon_recom Location: 361 25-36299 bp Feature: domain Description: Recombinase Location: 36845-36944 bp Feature: domain Description: Recombinase Location: 36845-36944 bp Feature: gene Location: 37183-37629 bp Feature: gene Location: 37684-37998 bp Feature: domain Description: DUF5372 Location: 37780-37987 bp Feature: domain Description: DUF5372 Location: 37780-37987 bp Feature: gene Location: 37956-38237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37959-38172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37959-381 72 bp Feature: gene Location: 38263-38418 bp Feature: domain Description: COG2316 Location: 38269-38407 bp Feature: domain Description: COG231 6 Location: 38269-38407 bp Feature: gene Location: 38425-38796 bp Feature: domain Description: COG2316 Location: 38434-38794 bp Feature: domain Description: COG231 6 Location: 38434-38794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SseA (COG2897), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), DUF5372 (pfam17342), COG2316 (Predicted hydrolase, HD superfamily )