myRT

myRT report for GCA_013304125.1_ASM1330412v1

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Seq: JAAISQ010000118.1 Enterocloster clostridioformis strain MSK.2.98 NODE_119_length_2789_cov_373.901, whole genome shotgun sequence (2789 bp)
Overview 1 RT 1: 163-2634 bp Neighborhood of RT #1 [163, 2634] RVT-GII HNHc Feature: gene Location: 163-2043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1 21 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1795-1933 bp Feature: domain Description: HNHc Note: nucleases Location: 1 795-1 933 bp Feature: gene Location: 2242-2490 bp Feature: gene Location: 2500-2634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JAAISQ010000119.1 Enterocloster clostridioformis strain MSK.2.98 NODE_120_length_2708_cov_380.678, whole genome shotgun sequence (2708 bp)
Overview 1 RT 1: 123-2451 bp Neighborhood of RT #1 [123, 2451] RVT-GII HNHc RVT-GII Feature: gene Location: 123-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9-2 16 bp Feature: domain Description: HNHc Note: nucleases Location: 774-942 bp Feature: domain Description: HNHc Note: nucleases Location: 774-942 bp Feature: gene Location: 1052-2008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367-1994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1367-1994 bp Feature: gene Location: 2266-2451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JAAISQ010000120.1 Enterocloster clostridioformis strain MSK.2.98 NODE_121_length_2570_cov_425.077, whole genome shotgun sequence (2570 bp)
Overview 1 RT 1: 129-2568 bp Neighborhood of RT #1 [129, 2568] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 129-1919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-1212 bp Feature: domain Description: Intron_maturas2 Location: 1392-1581 bp Feature: domain Description: Intron_maturas2 Location: 13 92-1581 bp Feature: domain Description: HNHc Note: nucleases Location: 1755-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 1755-1899 bp Feature: gene Location: 1935-2393 bp Feature: gene Location: 2419-2568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAISQ010000122.1 Enterocloster clostridioformis strain MSK.2.98 NODE_123_length_2299_cov_559.985, whole genome shotgun sequence (2299 bp)
Overview 1 RT 1: 3-2298 bp Neighborhood of RT #1 [3, 2297] RVT-GII Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 3-146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-120 bp Feature: gene Location: 317-1552 bp Feature: domain Description: Phage_int_SAM_1 Location: 689-905 bp Feature: domain Description: Phage_int_SAM_1 Location: 689-905 bp Feature: domain Description: INT_RitA_C_like Location: 986-1517 bp Feature: domain Description: INT_RitA_C_like Location: 986-1517 bp Feature: gene Location: 1545-2297 bp Feature: domain Description: INT_RitB_C_like Location: 1881-2298 bp Feature: domain Description: INT_RitB_C_like Location: 1881-2298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: JAAISQ010000125.1 Enterocloster clostridioformis strain MSK.2.98 NODE_126_length_1852_cov_548.259, whole genome shotgun sequence (1852 bp)
Overview 1 RT 1: 183-1592 bp Neighborhood of RT #1 [183, 1765] RVT-GII GIIM Feature: gene Location: 183-320 bp Feature: gene Location: 437-1765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695 -1310 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1592 bp Feature: domain Description: GIIM Note: maturase Location: 1373-15 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAISQ010000135.1 Enterocloster clostridioformis strain MSK.2.98 NODE_136_length_1488_cov_1717.88, whole genome shotgun sequence (1488 bp)
Overview 1 RT 1: 1-1485 bp Neighborhood of RT #1 [1, 1485] RVT-GII GIIM Feature: gene Location: 1-834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-538 bp Feature: domain Description: GIIM Note: maturase Location: 601-829 bp Feature: domain Description: GIIM Note: maturase Location: 6 01-829 bp Feature: gene Location: 989-1132 bp Feature: gene Location: 1207-1485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAISQ010000154.1 Enterocloster clostridioformis strain MSK.2.98 NODE_155_length_612_cov_522.758, whole genome shotgun sequence (612 bp)
Overview 1 RT 1: 2-532 bp Neighborhood of RT #1 [2, 609] RVT-GII INT_RitC_C_like Feature: gene Location: 2-145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-7 4 bp Feature: gene Location: 196-609 bp Feature: domain Description: INT_RitC_C_like Location: 202-532 bp Feature: domain Description: INT_RitC_C_like Location: 202-532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182)

Seq: JAAISQ010000181.1 Enterocloster clostridioformis strain MSK.2.98 NODE_185_length_334_cov_493.713, whole genome shotgun sequence (334 bp)
Overview 1 RT 1: 93-333 bp Neighborhood of RT #1 [93, 332] RVT-GII Feature: gene Location: 93-332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99-333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAISQ010000078.1 Enterocloster clostridioformis strain MSK.2.98 NODE_78_length_14674_cov_183.95, whole genome shotgun sequence (14674 bp)
Overview 1 RT 1: 1393-6710 bp Neighborhood of RT #1 [1393, 6739] HTH_Tnp_1 COG3943 RVT-Retrons Virulence_RhuM Virulence_RhuM Feature: gene Location: 1393-1761 bp Feature: domain Description: HTH_Tnp_1 Location: 1477-1600 bp Feature: domain Description: HTH_Tnp_1 Location: 1477-1600 bp Feature: gene Location: 2314-3336 bp Feature: domain Description: COG3943 Location: 2332-3301 bp Feature: domain Description: COG39 43 Location: 2332-3301 bp Feature: gene Location: 3429-5408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4566-5130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4566-5130 bp Feature: gene Location: 5836-6444 bp Feature: domain Description: Virulence_RhuM Location: 5896-6376 bp Feature: domain Description: Virulence_RhuM Location: 589 6-6376 bp Feature: gene Location: 6344-6739 bp Feature: domain Description: Virulence_RhuM Location: 6419-6710 bp Feature: domain Description: Virulence_RhuM Location: 6419 -6710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), COG3943 (Uncharacterized conserved protein ), RVT-Retrons, Virulence_RhuM (pfam13310)

Seq: JAAISQ010000082.1 Enterocloster clostridioformis strain MSK.2.98 NODE_82_length_13659_cov_298.143, whole genome shotgun sequence (13659 bp)
Overview 1 RT 1: 1729-3980 bp Neighborhood of RT #1 [1729, 3980] YhcG_C YhcG RVT-GII Feature: gene Location: 1729-2112 bp Feature: domain Description: YhcG_C Location: 1732-2053 bp Feature: domain Description: YhcG_C Location: 1732-2053 bp Feature: gene Location: 2085-2513 bp Feature: domain Description: YhcG Location: 2145-2481 bp Feature: domain Description: YhcG Location: 2145-2481 bp Feature: gene Location: 3218-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3224-3458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3224-3458 bp Feature: gene Location: 3484-3684 bp Feature: gene Location: 3789-3980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG_C, YhcG (COG4804), RVT-GII

Seq: JAAISQ010000088.1 Enterocloster clostridioformis strain MSK.2.98 NODE_88_length_9920_cov_243.71, whole genome shotgun sequence (9920 bp)
Overview 1 RT 1: 3-1415 bp Neighborhood of RT #1 [3, 1522] RVT-GII GIIM PHA02517 HTH_21 Feature: gene Location: 3-569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-120 bp Feature: domain Description: GIIM Note: maturase Location: 174-393 bp Feature: domain Description: GIIM Note: maturase Location: 174-393 bp Feature: gene Location: 737-1072 bp Feature: domain Description: PHA02517 Location: 752-1070 bp Feature: domain Description: PHA02517 Location: 752-1070 bp Feature: gene Location: 1130-1522 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)