myRT

myRT report for GCA_013304225.1_ASM1330422v1

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Seq: JAAIST010000099.1 Enterocloster clostridioformis strain MSK.2.78 NODE_100_length_2789_cov_632.925, whole genome shotgun sequence (2789 bp)
Overview 1 RT 1: 163-2634 bp Neighborhood of RT #1 [163, 2634] RVT-GII HNHc Feature: gene Location: 163-2043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1 21 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1795-1933 bp Feature: domain Description: HNHc Note: nucleases Location: 1 795-1 933 bp Feature: gene Location: 2242-2490 bp Feature: gene Location: 2500-2634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JAAIST010000100.1 Enterocloster clostridioformis strain MSK.2.78 NODE_101_length_2708_cov_246.295, whole genome shotgun sequence (2708 bp)
Overview 1 RT 1: 701-2467 bp Neighborhood of RT #1 [701, 2586] RVT-GII RVT-GII HNHc Feature: gene Location: 701-1657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1643 bp Feature: gene Location: 1648-2586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654-1741 bp Feature: domain Description: HNHc Note: nucleases Location: 2299-2467 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 99-2 467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JAAIST010000102.1 Enterocloster clostridioformis strain MSK.2.78 NODE_103_length_2299_cov_357.364, whole genome shotgun sequence (2299 bp)
Overview 1 RT 1: 3-2298 bp Neighborhood of RT #1 [3, 2297] RVT-GII Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 3-146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-120 bp Feature: gene Location: 317-1552 bp Feature: domain Description: Phage_int_SAM_1 Location: 689-905 bp Feature: domain Description: Phage_int_SAM_1 Location: 689-905 bp Feature: domain Description: INT_RitA_C_like Location: 986-1517 bp Feature: domain Description: INT_RitA_C_like Location: 986-1517 bp Feature: gene Location: 1545-2297 bp Feature: domain Description: INT_RitB_C_like Location: 1881-2298 bp Feature: domain Description: INT_RitB_C_like Location: 1881-2298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: JAAIST010000113.1 Enterocloster clostridioformis strain MSK.2.78 NODE_116_length_1488_cov_998.549, whole genome shotgun sequence (1488 bp)
Overview 1 RT 1: 1-1485 bp Neighborhood of RT #1 [1, 1485] RVT-GII GIIM Feature: gene Location: 1-834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -538 bp Feature: domain Description: GIIM Note: maturase Location: 601-829 bp Feature: domain Description: GIIM Note: maturase Location: 601-829 bp Feature: gene Location: 989-1132 bp Feature: gene Location: 1207-1485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAIST010000133.1 Enterocloster clostridioformis strain MSK.2.78 NODE_139_length_612_cov_337.149, whole genome shotgun sequence (612 bp)
Overview 1 RT 1: 2-532 bp Neighborhood of RT #1 [2, 609] RVT-GII INT_RitC_C_like Feature: gene Location: 2-145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 -74 bp Feature: gene Location: 196-609 bp Feature: domain Description: INT_RitC_C_like Location: 202-532 bp Feature: domain Description: INT_RitC_C_like Location: 202-5 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182)

Seq: JAAIST010000054.1 Enterocloster clostridioformis strain MSK.2.78 NODE_54_length_29846_cov_130.689, whole genome shotgun sequence (29846 bp)
Overview 1 RT 1: 24888-29806 bp Neighborhood of RT #1 [24888, 29806] VirB4_CagE TraC-F-type RVT-GII Feature: gene Location: 24888-26867 bp Feature: domain Description: VirB4_CagE Location: 25002-25437 bp Feature: domain Description: VirB4_CagE Location: 25002-25437 bp Feature: domain Description: TraC-F-type Location: 25686-26811 bp Feature: domain Description: TraC-F-type Location: 256 86 -26 811 bp Feature: gene Location: 27096-27248 bp Feature: gene Location: 27578-29461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27896-28598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27896 -28598 bp Feature: gene Location: 29654-29806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT-GII

Seq: JAAIST010000072.1 Enterocloster clostridioformis strain MSK.2.78 NODE_72_length_14674_cov_116.09, whole genome shotgun sequence (14674 bp)
Overview 1 RT 1: 1393-6710 bp Neighborhood of RT #1 [1393, 6739] HTH_Tnp_1 COG3943 RVT-Retrons Virulence_RhuM Virulence_RhuM Feature: gene Location: 1393-1761 bp Feature: domain Description: HTH_Tnp_1 Location: 1477-1600 bp Feature: domain Description: HTH_Tnp_1 Location: 147 7 -1600 bp Feature: gene Location: 2314-3336 bp Feature: domain Description: COG3943 Location: 2332-3301 bp Feature: domain Description: COG3943 Location: 2332-3301 bp Feature: gene Location: 3429-5408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4566-5130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4566-5130 bp Feature: gene Location: 5836-6444 bp Feature: domain Description: Virulence_RhuM Location: 5896-6376 bp Feature: domain Description: Virulence_RhuM Location: 5896-637 6 bp Feature: gene Location: 6344-6739 bp Feature: domain Description: Virulence_RhuM Location: 6419-6710 bp Feature: domain Description: Virulence_RhuM Location: 6419-67 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), COG3943 (Uncharacterized conserved protein ), RVT-Retrons, Virulence_RhuM (pfam13310)

Seq: JAAIST010000075.1 Enterocloster clostridioformis strain MSK.2.78 NODE_75_length_13659_cov_192.935, whole genome shotgun sequence (13659 bp)
Overview 1 RT 1: 7944-11872 bp Neighborhood of RT #1 [7944, 11931] CitM RVT-GII YhcG YhcG_C Feature: gene Location: 7944-9284 bp Feature: domain Description: CitM Location: 7959-9279 bp Feature: domain Description: CitM Location: 7959-9279 bp Feature: gene Location: 9680-9871 bp Feature: gene Location: 10197-10442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10203-10437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10203-10437 bp Feature: gene Location: 11147-11575 bp Feature: domain Description: YhcG Location: 11207-11543 bp Feature: domain Description: YhcG Location: 11207-11543 bp Feature: gene Location: 11548-11931 bp Feature: domain Description: YhcG_C Location: 11551-11872 bp Feature: domain Description: YhcG_C Location: 11551-118 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitM (COG2851), RVT-GII, YhcG (COG4804), YhcG_C

Seq: JAAIST010000083.1 Enterocloster clostridioformis strain MSK.2.78 NODE_83_length_9920_cov_157.122, whole genome shotgun sequence (9920 bp)
Overview 1 RT 1: 3-1415 bp Neighborhood of RT #1 [3, 1522] RVT-GII GIIM PHA02517 HTH_21 Feature: gene Location: 3-569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9 -120 bp Feature: domain Description: GIIM Note: maturase Location: 174-393 bp Feature: domain Description: GIIM Note: maturase Location: 174-39 3 bp Feature: gene Location: 737-1072 bp Feature: domain Description: PHA02517 Location: 752-1070 bp Feature: domain Description: PHA02517 Location: 752-1070 bp Feature: gene Location: 1130-1522 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)