myRT

myRT report for GCA_013304255.1_ASM1330425v1

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Seq: JAAISV010000102.1 Enterocloster clostridioformis strain MSK.2.59 NODE_103_length_3610_cov_232.519, whole genome shotgun sequence (3610 bp)
Overview 1 RT 1: 1729-3458 bp Neighborhood of RT #1 [1729, 3463] YhcG_C YhcG RVT-GII Feature: gene Location: 1729-2112 bp Feature: domain Description: YhcG_C Location: 1732-2053 bp Feature: domain Description: YhcG_C Location: 1 732-2053 bp Feature: gene Location: 2085-2513 bp Feature: domain Description: YhcG Location: 2145-2481 bp Feature: domain Description: YhcG Location: 21 45-2481 bp Feature: gene Location: 3218-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3224-3458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3224-3458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG_C, YhcG (COG4804), RVT-GII

Seq: JAAISV010000111.1 Enterocloster clostridioformis strain MSK.2.59 NODE_112_length_2789_cov_697.772, whole genome shotgun sequence (2789 bp)
Overview 1 RT 1: 163-2634 bp Neighborhood of RT #1 [163, 2634] RVT-GII HNHc Feature: gene Location: 163-2043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-12 13 bp Feature: domain Description: HNHc Note: nucleases Location: 1795-1933 bp Feature: domain Description: HNHc Note: nucleases Location: 1795-1933 bp Feature: gene Location: 2242-2490 bp Feature: gene Location: 2500-2634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JAAISV010000133.1 Enterocloster clostridioformis strain MSK.2.59 NODE_136_length_1105_cov_1448.23, whole genome shotgun sequence (1105 bp)
Overview 1 RT 1: 66-939 bp Neighborhood of RT #1 [66, 1103] RVT-GII GIIM Feature: gene Location: 66-1103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-648 bp Feature: domain Description: GIIM Note: maturase Location: 711-939 bp Feature: domain Description: GIIM Note: maturase Location: 711-93 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAISV010000152.1 Enterocloster clostridioformis strain MSK.2.59 NODE_166_length_653_cov_580.452, whole genome shotgun sequence (653 bp)
Overview 1 RT 1: 1-648 bp Neighborhood of RT #1 [1, 650] RVT-GII INT_RitC_C_like Feature: gene Location: 1-186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-115 bp Feature: gene Location: 312-650 bp Feature: domain Description: INT_RitC_C_like Location: 318-648 bp Feature: domain Description: INT_RitC_C_like Location: 318-64 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182)

Seq: JAAISV010000079.1 Enterocloster clostridioformis strain MSK.2.59 NODE_79_length_12515_cov_60.4655, whole genome shotgun sequence (12515 bp)
Overview 1 RT 1: 7936-12326 bp Neighborhood of RT #1 [7936, 12361] Virulence_RhuM Virulence_RhuM RVT-Retrons COG3943 Feature: gene Location: 7936-8331 bp Feature: domain Description: Virulence_RhuM Location: 8011-8302 bp Feature: domain Description: Virulence_RhuM Location: 8011-8302 bp Feature: gene Location: 8231-8839 bp Feature: domain Description: Virulence_RhuM Location: 8291-8771 bp Feature: domain Description: Virulence_RhuM Location: 8291-8771 bp Feature: gene Location: 9264-11246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10404-10968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10404-10968 bp Feature: gene Location: 11339-12361 bp Feature: domain Description: COG3943 Location: 11357-12326 bp Feature: domain Description: COG3943 Location: 1135 7-12326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Virulence_RhuM (pfam13310), RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: JAAISV010000007.1 Enterocloster clostridioformis strain MSK.2.59 NODE_7_length_158075_cov_107.25, whole genome shotgun sequence (158075 bp)
Overview 1 RT 1: 90162-92918 bp Neighborhood of RT #1 [90162, 93100] HipB RVT-GII GIIM HTH_XRE Feature: gene Location: 90162-90503 bp Feature: domain Description: HipB Location: 90195-90438 bp Feature: domain Description: HipB Location: 90195-90438 bp Feature: gene Location: 90560-90697 bp Feature: gene Location: 91053-92357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91254-91872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91254-91872 bp Feature: domain Description: GIIM Note: maturase Location: 91926-92136 bp Feature: domain Description: GIIM Note: maturase Location: 91926 -92136 bp Feature: gene Location: 92470-92646 bp Feature: gene Location: 92729-93100 bp Feature: domain Description: HTH_XRE Location: 92759-92918 bp Feature: domain Description: HTH_XRE Location: 92759-92918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: JAAISV010000086.1 Enterocloster clostridioformis strain MSK.2.59 NODE_86_length_9920_cov_179.877, whole genome shotgun sequence (9920 bp)
Overview 1 RT 1: 3-1415 bp Neighborhood of RT #1 [3, 1522] RVT-GII GIIM PHA02517 HTH_21 Feature: gene Location: 3-569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-120 bp Feature: domain Description: GIIM Note: maturase Location: 174-393 bp Feature: domain Description: GIIM Note: maturase Location: 17 4-393 bp Feature: gene Location: 737-1072 bp Feature: domain Description: PHA02517 Location: 752-1070 bp Feature: domain Description: PHA02517 Location: 7 52-107 0 bp Feature: gene Location: 1130-1522 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)