myRT

myRT report for GCA_013304275.1_ASM1330427v1

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Seq: JAAISW010000128.1 Enterocloster clostridioformis strain MSK.2.26 NODE_129_length_2789_cov_463.308, whole genome shotgun sequence (2789 bp)
Overview 1 RT 1: 163-2634 bp Neighborhood of RT #1 [163, 2634] RVT-GII HNHc Feature: gene Location: 163-2043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1 21 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1795-1933 bp Feature: domain Description: HNHc Note: nucleases Location: 1 795-1 933 bp Feature: gene Location: 2242-2490 bp Feature: gene Location: 2500-2634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JAAISW010000129.1 Enterocloster clostridioformis strain MSK.2.26 NODE_130_length_2708_cov_248.922, whole genome shotgun sequence (2708 bp)
Overview 1 RT 1: 701-2467 bp Neighborhood of RT #1 [701, 2586] RVT-GII RVT-GII HNHc Feature: gene Location: 701-1657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1643 bp Feature: gene Location: 1648-2586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654-1741 bp Feature: domain Description: HNHc Note: nucleases Location: 2299-2467 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 99-2 467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: JAAISW010000133.1 Enterocloster clostridioformis strain MSK.2.26 NODE_134_length_2299_cov_498.43, whole genome shotgun sequence (2299 bp)
Overview 1 RT 1: 3-2298 bp Neighborhood of RT #1 [3, 2297] RVT-GII Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 3-146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-120 bp Feature: gene Location: 317-1552 bp Feature: domain Description: Phage_int_SAM_1 Location: 689-905 bp Feature: domain Description: Phage_int_SAM_1 Location: 689-905 bp Feature: domain Description: INT_RitA_C_like Location: 986-1517 bp Feature: domain Description: INT_RitA_C_like Location: 986-1517 bp Feature: gene Location: 1545-2297 bp Feature: domain Description: INT_RitB_C_like Location: 1881-2298 bp Feature: domain Description: INT_RitB_C_like Location: 1881-2298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: JAAISW010000152.1 Enterocloster clostridioformis strain MSK.2.26 NODE_160_length_1380_cov_1175.9, whole genome shotgun sequence (1380 bp)
Overview 1 RT 1: 1-1372 bp Neighborhood of RT #1 [1, 1377] RVT-GII GIIM Feature: gene Location: 1-282 bp Feature: gene Location: 409-609 bp Feature: gene Location: 655-1377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 658-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 658-1192 bp Feature: domain Description: GIIM Note: maturase Location: 1255-1372 bp Feature: domain Description: GIIM Note: maturase Location: 1255-1372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAISW010000001.1 Enterocloster clostridioformis strain MSK.2.26 NODE_1_length_377065_cov_228.682, whole genome shotgun sequence (377065 bp)
Overview 1 RT 1: 353532-364240 bp Neighborhood of RT #1 [353532, 364254] MobC COG4646 KOG0390 RVT-GII Intron_maturas2 HNHc YtxK COG4646 TTRAP Feature: gene Location: 353532-353795 bp Feature: domain Description: MobC Location: 353643-353766 bp Feature: domain Description: MobC Location: 35 3643-35 3766 bp Feature: gene Location: 353861-355744 bp Feature: domain Description: COG4646 Location: 353972-354392 bp Feature: domain Description: COG4646 Location: 35 3972-35 4392 bp Feature: domain Description: KOG0390 Location: 354668-354920 bp Feature: domain Description: KOG0390 Location: 35 4668-35 4920 bp Feature: gene Location: 355741-357555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356014-356824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 6014-35 6824 bp Feature: domain Description: Intron_maturas2 Location: 356893-357223 bp Feature: domain Description: Intron_maturas2 Location: 35 6893-35 7223 bp Feature: domain Description: HNHc Note: nucleases Location: 357373-357520 bp Feature: domain Description: HNHc Note: nucleases Location: 35 7373-35 75 20 bp Feature: gene Location: 358131-364031 bp Feature: domain Description: YtxK Location: 361050-361785 bp Feature: domain Description: YtxK Location: 36105 0-361785 bp Feature: domain Description: COG4646 Location: 361854-364017 bp Feature: domain Description: COG4646 Location: 36185 4-364017 bp Feature: gene Location: 364048-364254 bp Feature: domain Description: TTRAP Location: 364057-364240 bp Feature: domain Description: TTRAP Location: 36405 7-364240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YtxK (COG0827), TTRAP (pfam14203)

Seq: JAAISW010000167.1 Enterocloster clostridioformis strain MSK.2.26 NODE_223_length_612_cov_428.436, whole genome shotgun sequence (612 bp)
Overview 1 RT 1: 2-532 bp Neighborhood of RT #1 [2, 609] RVT-GII INT_RitC_C_like Feature: gene Location: 2-145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-74 bp Feature: gene Location: 196-609 bp Feature: domain Description: INT_RitC_C_like Location: 202-532 bp Feature: domain Description: INT_RitC_C_like Location: 202-532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182)

Seq: JAAISW010000003.1 Enterocloster clostridioformis strain MSK.2.26 NODE_3_length_195094_cov_149.691, whole genome shotgun sequence (195094 bp)
Overview 1 RT 1: 171963-175837 bp Neighborhood of RT #1 [171963, 175837] Spr RVT-GII Intron_maturas2 HNHc Feature: gene Location: 171963-172895 bp Feature: domain Description: Spr Location: 172542-172836 bp Feature: domain Description: Spr Location: 17 2542-17 2836 bp Feature: gene Location: 173036-173281 bp Feature: gene Location: 173487-175274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173754-174564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 37 54-17 4564 bp Feature: domain Description: Intron_maturas2 Location: 174639-175059 bp Feature: domain Description: Intron_maturas2 Location: 17 4639-17 5059 bp Feature: domain Description: HNHc Note: nucleases Location: 175101-175254 bp Feature: domain Description: HNHc Note: nucleases Location: 17 5101-17 5254 bp Feature: gene Location: 175289-175468 bp Feature: gene Location: 175484-175837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAISW010000062.1 Enterocloster clostridioformis strain MSK.2.26 NODE_62_length_26090_cov_288.922, whole genome shotgun sequence (26090 bp)
Overview 1 RT 1: 13002-17014 bp Neighborhood of RT #1 [13002, 17014] IME4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 13002-13547 bp Feature: domain Description: IME4 Location: 13011-13530 bp Feature: domain Description: IME4 Location: 13011-13530 bp Feature: gene Location: 13557-13805 bp Feature: gene Location: 13935-15767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14199-15030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14199-15030 bp Feature: domain Description: Intron_maturas2 Location: 15102-15417 bp Feature: domain Description: Intron_maturas2 Location: 15102-15417 bp Feature: domain Description: HNHc Note: nucleases Location: 15564-15738 bp Feature: domain Description: HNHc Note: nucleases Location: 15564-15738 bp Feature: gene Location: 16013-16228 bp Feature: gene Location: 16343-17014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IME4 (COG4725), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAISW010000078.1 Enterocloster clostridioformis strain MSK.2.26 NODE_78_length_14674_cov_147.72, whole genome shotgun sequence (14674 bp)
Overview 1 RT 1: 1393-6710 bp Neighborhood of RT #1 [1393, 6739] HTH_Tnp_1 COG3943 RVT-Retrons Virulence_RhuM Virulence_RhuM Feature: gene Location: 1393-1761 bp Feature: domain Description: HTH_Tnp_1 Location: 1477-1600 bp Feature: domain Description: HTH_Tnp_1 Location: 1477-1600 bp Feature: gene Location: 2314-3336 bp Feature: domain Description: COG3943 Location: 2332-3301 bp Feature: domain Description: COG39 43 Location: 2332-3301 bp Feature: gene Location: 3429-5408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4566-5130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4566-5130 bp Feature: gene Location: 5836-6444 bp Feature: domain Description: Virulence_RhuM Location: 5896-6376 bp Feature: domain Description: Virulence_RhuM Location: 589 6-6376 bp Feature: gene Location: 6344-6739 bp Feature: domain Description: Virulence_RhuM Location: 6419-6710 bp Feature: domain Description: Virulence_RhuM Location: 6419 -6710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), COG3943 (Uncharacterized conserved protein ), RVT-Retrons, Virulence_RhuM (pfam13310)

Seq: JAAISW010000081.1 Enterocloster clostridioformis strain MSK.2.26 NODE_81_length_13659_cov_261.049, whole genome shotgun sequence (13659 bp)
Overview 1 RT 1: 1729-3980 bp Neighborhood of RT #1 [1729, 3980] YhcG_C YhcG RVT-GII Feature: gene Location: 1729-2112 bp Feature: domain Description: YhcG_C Location: 1732-2053 bp Feature: domain Description: YhcG_C Location: 1732-2053 bp Feature: gene Location: 2085-2513 bp Feature: domain Description: YhcG Location: 2145-2481 bp Feature: domain Description: YhcG Location: 2145-2481 bp Feature: gene Location: 3218-3463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3224-3458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3224-3458 bp Feature: gene Location: 3484-3684 bp Feature: gene Location: 3789-3980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG_C, YhcG (COG4804), RVT-GII

Seq: JAAISW010000091.1 Enterocloster clostridioformis strain MSK.2.26 NODE_91_length_9920_cov_190.661, whole genome shotgun sequence (9920 bp)
Overview 1 RT 1: 3-1415 bp Neighborhood of RT #1 [3, 1522] RVT-GII GIIM PHA02517 HTH_21 Feature: gene Location: 3-569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-120 bp Feature: domain Description: GIIM Note: maturase Location: 174-393 bp Feature: domain Description: GIIM Note: maturase Location: 174-393 bp Feature: gene Location: 737-1072 bp Feature: domain Description: PHA02517 Location: 752-1070 bp Feature: domain Description: PHA02517 Location: 752-1070 bp Feature: gene Location: 1130-1522 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Feature: domain Description: HTH_21 Location: 1256-1415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)