myRT

myRT report for GCA_013304305.1_ASM1330430v1

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Seq: JAAITT010000024.1 Enterocloster aldensis strain MSK.1.17 NODE_24_length_95892_cov_101.914, whole genome shotgun sequence (95892 bp)
Overview 1 RT 1: 22189-26509 bp Neighborhood of RT #1 [22189, 26535] AcrR DltE RVT-Retrons AIM24 Cons_hypoth95 Feature: gene Location: 22189-22773 bp Feature: domain Description: AcrR Location: 22204-22573 bp Feature: domain Description: AcrR Location: 22204-22573 bp Feature: gene Location: 22937-23746 bp Feature: domain Description: DltE Location: 22970-23723 bp Feature: domain Description: DltE Location: 22970-23723 bp Feature: gene Location: 24069-25106 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24276-24825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24276-24825 bp Feature: gene Location: 25162-25839 bp Feature: domain Description: AIM24 Location: 25165-25828 bp Feature: domain Description: AIM24 Location: 251 65-25828 bp Feature: gene Location: 25978-26535 bp Feature: domain Description: Cons_hypoth95 Location: 25981-26509 bp Feature: domain Description: Cons_hypoth95 Location: 25981 -26509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), DltE (COG3967), RVT-Retrons, AIM24 (pfam01987), Cons_hypoth95 (pfam03602)

Seq: JAAITT010000030.1 Enterocloster aldensis strain MSK.1.17 NODE_30_length_76857_cov_92.2942, whole genome shotgun sequence (76857 bp)
Overview 1 RT 1: 52226-57140 bp Neighborhood of RT #1 [52226, 57250] DUF3801 VirD4 RVT-GII VirD4 Feature: gene Location: 52226-52702 bp Feature: domain Description: DUF3801 Location: 52289-52676 bp Feature: domain Description: DUF3801 Location: 52 2 89-52 676 bp Feature: gene Location: 52699-53517 bp Feature: domain Description: VirD4 Location: 52912-53455 bp Feature: domain Description: VirD4 Location: 52 912 -53455 bp Feature: gene Location: 54143-56053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54473-55217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54473-552 17 bp Feature: gene Location: 56077-56232 bp Feature: gene Location: 56273-57250 bp Feature: domain Description: VirD4 Location: 56336-57140 bp Feature: domain Description: VirD4 Location: 56336-57140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII

Seq: JAAITT010000045.1 Enterocloster aldensis strain MSK.1.17 NODE_45_length_51752_cov_152.693, whole genome shotgun sequence (51752 bp)
Overview 1 RT 1: 41548-48785 bp Neighborhood of RT #1 [41548, 48790] rumA rumA RVT-UG3 RVT-UG8 Ecl1 Ecl1 Ser_Recombinase Feature: gene Location: 41548-41808 bp Feature: gene Location: 41881-43407 bp Feature: domain Description: rumA Location: 41926-42553 bp Feature: domain Description: rumA Location: 41926-42553 bp Feature: domain Description: rumA Location: 42748-43378 bp Feature: domain Description: rumA Location: 42748-43 3 78 bp Feature: gene Location: 43722-45515 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 44517-44952 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 44517-44952 bp Feature: gene Location: 45746-47728 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46262-46703 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46262-46703 bp Feature: gene Location: 47793-48254 bp Feature: domain Description: Ecl1 Location: 48024-48102 bp Feature: domain Description: Ecl1 Location: 48024-48102 bp Feature: domain Description: Ecl1 Location: 48117-48192 bp Feature: domain Description: Ecl1 Location: 48117-48192 bp Feature: gene Location: 48638-48790 bp Feature: domain Description: Ser_Recombinase Location: 48653-48785 bp Feature: domain Description: Ser_Recombinase Location: 48653 -48785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rumA (TIGR00479), RVT-UG3, RVT-UG8, Ecl1 (pfam12855), Ser_Recombinase (cl02788)

Seq: JAAITT010000080.1 Enterocloster aldensis strain MSK.1.17 NODE_80_length_12702_cov_90.2954, whole genome shotgun sequence (12702 bp)
Overview 1 RT 1: 7584-12581 bp Neighborhood of RT #1 [7584, 12581] RVT-GII RVT-GII RVT-GII GIIM RVT-GII GIIM RVT-GII Feature: gene Location: 7584-7760 bp Feature: gene Location: 7874-8248 bp Feature: gene Location: 8292-8525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8310-8517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8310-8517 bp Feature: gene Location: 8535-8894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8745-8889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874 5-8889 bp Feature: gene Location: 9126-9770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9132-9267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9132-9267 bp Feature: domain Description: GIIM Note: maturase Location: 9321-9552 bp Feature: domain Description: GIIM Note: maturase Location: 9321-9552 bp Feature: gene Location: 9853-10644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9856-10261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9856-10261 bp Feature: domain Description: GIIM Note: maturase Location: 10342-10558 bp Feature: domain Description: GIIM Note: maturase Location: 1034 2-10558 bp Feature: gene Location: 10711-11097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10915-11095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10915-11095 bp Feature: gene Location: 11439-11660 bp Feature: gene Location: 12102-12581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)