myRT

myRT report for GCA_013305355.1_ASM1330535v1

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Seq: JABEQV010000202.1 Pseudomonas syringae pv. actinidiae strain kw1483 NODE_202_length_4825_cov_117.998736, whole genome shotgun sequence (4825 bp)
Overview 1 RT 1: 195-3219 bp Neighborhood of RT #1 [195, 3219] RVT-UG9 UvrD_C Feature: gene Location: 195-1226 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 201-474 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 201 -474 bp Feature: gene Location: 1324-1914 bp Feature: domain Description: UvrD_C Location: 1648-1843 bp Feature: domain Description: UvrD_C Location: 1 648-1 843 bp Feature: gene Location: 2275-3219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: JABEQV010000241.1 Pseudomonas syringae pv. actinidiae strain kw1483 NODE_241_length_1756_cov_1611.679571, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 2-1753 bp Neighborhood of RT #1 [2, 1753] RVT-GII GIIM Feature: gene Location: 2-1255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245-860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 45-860 bp Feature: domain Description: GIIM Note: maturase Location: 905-1115 bp Feature: domain Description: GIIM Note: maturase Location: 905-1115 bp Feature: gene Location: 1478-1753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQV010000250.1 Pseudomonas syringae pv. actinidiae strain kw1483 NODE_250_length_1493_cov_1416.854520, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 4-1492 bp Neighborhood of RT #1 [4, 1492] RVT-GII GIIM Feature: gene Location: 4-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943 -1165 bp Feature: gene Location: 1346-1492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQV010000279.1 Pseudomonas syringae pv. actinidiae strain kw1483 NODE_279_length_682_cov_2739.714050, whole genome shotgun sequence (682 bp)
Overview 1 RT 1: 3-492 bp Neighborhood of RT #1 [3, 626] RVT-GII GIIM Feature: gene Location: 3-626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Feature: domain Description: GIIM Note: maturase Location: 264-492 bp Feature: domain Description: GIIM Note: maturase Location: 264 -4 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQV010000285.1 Pseudomonas syringae pv. actinidiae strain kw1483 NODE_285_length_634_cov_2529.834829, whole genome shotgun sequence (634 bp)
Overview 1 RT 1: 1-493 bp Neighborhood of RT #1 [1, 492] RVT-GII Feature: gene Location: 1-492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABEQV010000036.1 Pseudomonas syringae pv. actinidiae strain kw1483 NODE_36_length_48372_cov_128.115954, whole genome shotgun sequence (48372 bp)
Overview 1 RT 1: 39-5948 bp Neighborhood of RT #1 [39, 5948] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 39-1262 bp Feature: domain Description: COG3666 Location: 81-522 bp Feature: domain Description: COG36 6 6 Location: 81-522 bp Feature: domain Description: DDE_Tnp_1_6 Location: 999-1221 bp Feature: domain Description: DDE_Tnp_1_6 Location: 999-1221 bp Feature: gene Location: 1513-1674 bp Feature: gene Location: 1760-3469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1913-2510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1913-2510 bp Feature: gene Location: 3913-5331 bp Feature: domain Description: ComA-like_MBL-fold Location: 4462-4948 bp Feature: domain Description: ComA-like_MBL-fold Location: 446 2-4948 bp Feature: gene Location: 5685-5948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: JABEQV010000058.1 Pseudomonas syringae pv. actinidiae strain kw1483 NODE_58_length_37093_cov_93.374919, whole genome shotgun sequence (37093 bp)
Overview 1 RT 1: 1180-7143 bp Neighborhood of RT #1 [1180, 7151] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1180-1815 bp Feature: domain Description: DUF2625 Location: 1192-1780 bp Feature: domain Description: DUF2625 Location: 1192-17 80 bp Feature: gene Location: 1822-2013 bp Feature: gene Location: 2253-4088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2514-3327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2514-3327 bp Feature: domain Description: Intron_maturas2 Location: 3423-3738 bp Feature: domain Description: Intron_maturas2 Location: 3423-37 38 bp Feature: domain Description: HNHc Note: nucleases Location: 3861-4026 bp Feature: domain Description: HNHc Note: nucleases Location: 3861-4026 bp Feature: gene Location: 4919-5974 bp Feature: domain Description: Top1 Location: 4952-5966 bp Feature: domain Description: Top1 Location: 4952-5966 bp Feature: gene Location: 6063-7151 bp Feature: domain Description: modC_ABC Location: 6078-7143 bp Feature: domain Description: modC_ABC Location: 607 8-7 143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)