myRT

myRT report for GCA_013305395.1_ASM1330539v1

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Seq: JABEQW010000199.1 Pseudomonas syringae pv. actinidiae strain kw1606 NODE_199_length_4825_cov_108.806866, whole genome shotgun sequence (4825 bp)
Overview 1 RT 1: 195-3219 bp Neighborhood of RT #1 [195, 3219] RVT-UG9 UvrD_C Feature: gene Location: 195-1226 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 201-474 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 201 -474 bp Feature: gene Location: 1324-1914 bp Feature: domain Description: UvrD_C Location: 1648-1843 bp Feature: domain Description: UvrD_C Location: 1 648-1 843 bp Feature: gene Location: 2275-3219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: JABEQW010000243.1 Pseudomonas syringae pv. actinidiae strain kw1606 NODE_243_length_1756_cov_1724.418702, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 1-1615 bp Neighborhood of RT #1 [1, 1755] RVT-GII GIIM Feature: gene Location: 1-279 bp Feature: gene Location: 505-1755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQW010000251.1 Pseudomonas syringae pv. actinidiae strain kw1606 NODE_251_length_1493_cov_1399.049435, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 4-1492 bp Neighborhood of RT #1 [4, 1492] RVT-GII GIIM Feature: gene Location: 4-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943 -1165 bp Feature: gene Location: 1346-1492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQW010000280.1 Pseudomonas syringae pv. actinidiae strain kw1606 NODE_280_length_682_cov_3105.165289, whole genome shotgun sequence (682 bp)
Overview 1 RT 1: 3-492 bp Neighborhood of RT #1 [3, 626] RVT-GII GIIM Feature: gene Location: 3-626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Feature: domain Description: GIIM Note: maturase Location: 264-492 bp Feature: domain Description: GIIM Note: maturase Location: 264 -4 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQW010000285.1 Pseudomonas syringae pv. actinidiae strain kw1606 NODE_285_length_634_cov_2837.423698, whole genome shotgun sequence (634 bp)
Overview 1 RT 1: 1-629 bp Neighborhood of RT #1 [1, 631] RVT-GII Feature: gene Location: 1-126 bp Feature: gene Location: 143-631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149-629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149-629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JABEQW010000035.1 Pseudomonas syringae pv. actinidiae strain kw1606 NODE_35_length_48372_cov_134.897236, whole genome shotgun sequence (48372 bp)
Overview 1 RT 1: 39-5948 bp Neighborhood of RT #1 [39, 5948] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 39-1262 bp Feature: domain Description: COG3666 Location: 81-522 bp Feature: domain Description: COG36 6 6 Location: 81-522 bp Feature: domain Description: DDE_Tnp_1_6 Location: 999-1221 bp Feature: domain Description: DDE_Tnp_1_6 Location: 999-1221 bp Feature: gene Location: 1513-1674 bp Feature: gene Location: 1760-3469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1913-2510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1913-2510 bp Feature: gene Location: 3913-5331 bp Feature: domain Description: ComA-like_MBL-fold Location: 4462-4948 bp Feature: domain Description: ComA-like_MBL-fold Location: 446 2-4948 bp Feature: gene Location: 5685-5948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: JABEQW010000061.1 Pseudomonas syringae pv. actinidiae strain kw1606 NODE_61_length_37093_cov_108.577183, whole genome shotgun sequence (37093 bp)
Overview 1 RT 1: 29943-35879 bp Neighborhood of RT #1 [29943, 35914] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 29943-31031 bp Feature: domain Description: modC_ABC Location: 29958-31023 bp Feature: domain Description: modC_ABC Location: 29958-31023 bp Feature: gene Location: 31120-32175 bp Feature: domain Description: Top1 Location: 31153-32167 bp Feature: domain Description: Top1 Location: 31153-32167 bp Feature: gene Location: 33006-34841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33267-34080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33267 -34080 bp Feature: domain Description: Intron_maturas2 Location: 34176-34491 bp Feature: domain Description: Intron_maturas2 Location: 3417 6-34491 bp Feature: domain Description: HNHc Note: nucleases Location: 34614-34779 bp Feature: domain Description: HNHc Note: nucleases Location: 34614-347 7 9 bp Feature: gene Location: 35081-35272 bp Feature: gene Location: 35279-35914 bp Feature: domain Description: DUF2625 Location: 35291-35879 bp Feature: domain Description: DUF2625 Location: 35291-3587 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)