myRT

myRT report for GCA_013305425.1_ASM1330542v1

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Seq: JABEQU010000198.1 Pseudomonas syringae pv. actinidiae strain kw1361 NODE_198_length_4825_cov_166.383951, whole genome shotgun sequence (4825 bp)
Overview 1 RT 1: 1607-3879 bp Neighborhood of RT #1 [1607, 4631] UvrD_C RVT-UG9 Feature: gene Location: 1607-2551 bp Feature: gene Location: 2912-3502 bp Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: domain Description: UvrD_C Location: 3236-3431 bp Feature: gene Location: 3600-4631 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3606-3879 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3606-3879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: JABEQU010000243.1 Pseudomonas syringae pv. actinidiae strain kw1361 NODE_243_length_1756_cov_2404.294223, whole genome shotgun sequence (1756 bp)
Overview 1 RT 1: 1-1615 bp Neighborhood of RT #1 [1, 1755] RVT-GII GIIM Feature: gene Location: 1-279 bp Feature: gene Location: 505-1755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQU010000252.1 Pseudomonas syringae pv. actinidiae strain kw1361 NODE_252_length_1493_cov_2041.872175, whole genome shotgun sequence (1493 bp)
Overview 1 RT 1: 4-1492 bp Neighborhood of RT #1 [4, 1492] RVT-GII GIIM Feature: gene Location: 4-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208-865 bp Feature: domain Description: GIIM Note: maturase Location: 943-1165 bp Feature: domain Description: GIIM Note: maturase Location: 943 -1165 bp Feature: gene Location: 1346-1492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQU010000280.1 Pseudomonas syringae pv. actinidiae strain kw1361 NODE_280_length_682_cov_4119.555372, whole genome shotgun sequence (682 bp)
Overview 1 RT 1: 3-492 bp Neighborhood of RT #1 [3, 626] RVT-GII GIIM Feature: gene Location: 3-626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Feature: domain Description: GIIM Note: maturase Location: 264-492 bp Feature: domain Description: GIIM Note: maturase Location: 264 -4 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JABEQU010000036.1 Pseudomonas syringae pv. actinidiae strain kw1361 NODE_36_length_48372_cov_183.678435, whole genome shotgun sequence (48372 bp)
Overview 1 RT 1: 43042-48293 bp Neighborhood of RT #1 [43042, 48334] ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 43042-44460 bp Feature: domain Description: ComA-like_MBL-fold Location: 43591-44077 bp Feature: domain Description: ComA-like_MBL-fold Location: 435 91-44077 bp Feature: gene Location: 44645-44779 bp Feature: gene Location: 44904-46613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45057-45654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 05 7-45 65 4 bp Feature: gene Location: 46699-46860 bp Feature: gene Location: 47111-48334 bp Feature: domain Description: COG3666 Location: 47153-47594 bp Feature: domain Description: COG3666 Location: 4715 3-475 94 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48071-48293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: JABEQU010000062.1 Pseudomonas syringae pv. actinidiae strain kw1361 NODE_62_length_37093_cov_145.267506, whole genome shotgun sequence (37093 bp)
Overview 1 RT 1: 29943-35879 bp Neighborhood of RT #1 [29943, 35914] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 29943-31031 bp Feature: domain Description: modC_ABC Location: 29958-31023 bp Feature: domain Description: modC_ABC Location: 29958-31023 bp Feature: gene Location: 31120-32175 bp Feature: domain Description: Top1 Location: 31153-32167 bp Feature: domain Description: Top1 Location: 31153-3216 7 bp Feature: gene Location: 33006-34841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33267-34080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3326 7-34080 bp Feature: domain Description: Intron_maturas2 Location: 34176-34491 bp Feature: domain Description: Intron_maturas2 Location: 34176 -34491 bp Feature: domain Description: HNHc Note: nucleases Location: 34614-34779 bp Feature: domain Description: HNHc Note: nucleases Location: 346 14-34779 bp Feature: gene Location: 35081-35272 bp Feature: gene Location: 35279-35914 bp Feature: domain Description: DUF2625 Location: 35291-35879 bp Feature: domain Description: DUF26 25 Location: 35291-35879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)