myRT

myRT report for GCA_013307435.1_ASM1330743v1

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Seq: JABMLM010000386.1 Microvirga sp. R24 1123, whole genome shotgun sequence (238587 bp)
Overview 1 RT 1: 159690-162890 bp 2 RT 2: 200322-204123 bp Neighborhood of RT #1 [159690, 162895] RVT-GII GIIM fabG fabG Neighborhood of RT #2 [200322, 204123] TIR_2 RVT-Retrons HTH_XRE Feature: gene Location: 159690-159908 bp Feature: gene Location: 159915-160067 bp Feature: gene Location: 160590-161879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160839-161502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 60839-1 61 502 bp Feature: domain Description: GIIM Note: maturase Location: 161574-161784 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 574-1 61 784 bp Feature: gene Location: 161963-162556 bp Feature: domain Description: fabG Location: 162176-162554 bp Feature: domain Description: fabG Location: 1 621 76-1 62554 bp Feature: gene Location: 162593-162895 bp Feature: domain Description: fabG Location: 162602-162890 bp Feature: domain Description: fabG Location: 1 62602-1 62890 bp Feature: gene Location: 200322-201338 bp Feature: gene Location: 201676-202635 bp Feature: domain Description: TIR_2 Location: 201694-201979 bp Feature: domain Description: TIR_2 Location: 201 694-201 979 bp Feature: gene Location: 202715-203623 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 202874-203399 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 202874-203399 bp Feature: gene Location: 203601-203912 bp Feature: domain Description: HTH_XRE Location: 203613-203775 bp Feature: domain Description: HTH_XRE Location: 20361 3-203775 bp Feature: gene Location: 203947-204123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), fabG (PRK12825), TIR_2 (pfam13676), RVT-Retrons, HTH_XRE (smart00530)

Seq: JABMLM010000288.1 Microvirga sp. R24 927, whole genome shotgun sequence (31800 bp)
Overview 1 RT 1: 13567-19076 bp Neighborhood of RT #1 [13567, 19102] RmlC MdlB RVT-GII RVT-GII SnoaL_4 AfuA Feature: gene Location: 13567-14064 bp Feature: domain Description: RmlC Location: 13603-14050 bp Feature: domain Description: RmlC Location: 13603-14050 bp Feature: gene Location: 14238-16094 bp Feature: domain Description: MdlB Location: 14313-16080 bp Feature: domain Description: MdlB Location: 14313-16080 bp Feature: gene Location: 16819-17058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16879-17053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16879-17053 bp Feature: gene Location: 17065-17301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17071-17215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17071-172 15 bp Feature: gene Location: 17385-17927 bp Feature: domain Description: SnoaL_4 Location: 17484-17859 bp Feature: domain Description: SnoaL_4 Location: 17484-17859 bp Feature: gene Location: 17990-19102 bp Feature: domain Description: AfuA Location: 18179-19076 bp Feature: domain Description: AfuA Location: 18179-19076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RmlC (COG4101), MdlB (COG1132), RVT-GII, SnoaL_4 (pfam13577), AfuA (COG1840)