myRT

myRT report for GCA_013314905.1_ASM1331490v1

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Seq: JABTYD010000015.1 Cupriavidus taiwanensis strain USM6 USM6_assembled_contig_15, whole genome shotgun sequence (103119 bp)
Overview 1 RT 1: 90598-95532 bp Neighborhood of RT #1 [90598, 95795] guaA RVT-GII GIIM AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 90598-91209 bp Feature: gene Location: 91184-92803 bp Feature: domain Description: guaA Location: 91190-92801 bp Feature: domain Description: guaA Location: 91 1 90-92801 bp Feature: gene Location: 92944-93891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92953-93403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92953-93403 bp Feature: domain Description: GIIM Note: maturase Location: 93463-93646 bp Feature: domain Description: GIIM Note: maturase Location: 93463-93646 bp Feature: gene Location: 94037-94858 bp Feature: domain Description: AbiEi_3_N Location: 94055-94328 bp Feature: domain Description: AbiEi_3_N Location: 94055-94328 bp Feature: domain Description: AbiEi_3 Location: 94343-94832 bp Feature: domain Description: AbiEi_3 Location: 94343-94832 bp Feature: gene Location: 94725-95795 bp Feature: domain Description: AbiEii Location: 94893-95532 bp Feature: domain Description: AbiEii Location: 94893-95532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT guaA (PRK00074), RVT-GII, GIIM (pfam08388), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: JABTYD010000050.1 Cupriavidus taiwanensis strain USM6 USM6_assembled_contig_50, whole genome shotgun sequence (53431 bp)
Overview 1 RT 1: 29186-34592 bp Neighborhood of RT #1 [29186, 34594] PhyH PRK13623 RVT-GII GIIM HNHc CcmA rpsI Feature: gene Location: 29186-29983 bp Feature: domain Description: PhyH Location: 29219-29969 bp Feature: domain Description: PhyH Location: 2 92 19-2 9969 bp Feature: gene Location: 30044-30412 bp Feature: domain Description: PRK13623 Location: 30077-30410 bp Feature: domain Description: PRK1362 3 Location: 30077-30410 bp Feature: gene Location: 30525-31820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30528-31116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3052 8-31116 bp Feature: domain Description: GIIM Note: maturase Location: 31167-31401 bp Feature: domain Description: GIIM Note: maturase Location: 31167-31401 bp Feature: domain Description: HNHc Note: nucleases Location: 31620-31785 bp Feature: domain Description: HNHc Note: nucleases Location: 3162 0-31785 bp Feature: gene Location: 33455-33943 bp Feature: domain Description: CcmA Location: 33467-33854 bp Feature: domain Description: CcmA Location: 33467-33854 bp Feature: gene Location: 34202-34594 bp Feature: domain Description: rpsI Location: 34214-34592 bp Feature: domain Description: rpsI Location: 342 14-34592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhyH (pfam05721), PRK13623 (iron-sulfur cluster insertion protein ErpA; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), CcmA (COG4133), rpsI (PRK00132)

Seq: JABTYD010000006.1 Cupriavidus taiwanensis strain USM6 USM6_assembled_contig_6, whole genome shotgun sequence (136385 bp)
Overview 1 RT 1: 29908-33240 bp Neighborhood of RT #1 [29908, 33240] RVT_N RVT-GII RVT-GII GIIM COG3547 Feature: gene Location: 29908-30216 bp Feature: gene Location: 30279-30428 bp Feature: gene Location: 30983-31744 bp Feature: RT Description: RVT_N Location: 31046-31280 bp Feature: RT Description: RVT_N Location: 3 1046-3 1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31334-31700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 13 3 4-3 1700 bp Feature: gene Location: 31653-32483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31686-31977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1686-3 1977 bp Feature: domain Description: GIIM Note: maturase Location: 32028-32262 bp Feature: domain Description: GIIM Note: maturase Location: 3 2028-3 2262 bp Feature: gene Location: 32474-33073 bp Feature: domain Description: COG3547 Location: 32576-32987 bp Feature: domain Description: COG3 547 Location: 3 2576-3 2987 bp Feature: gene Location: 33109-33240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )