myRT

myRT report for GCA_013315045.1_ASM1331504v1

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Seq: JABUHI010000001.1 Gardnerella vaginalis strain UMB0540 ERS1455142_SC_contig000001, whole genome shotgun sequence (1639620 bp)
Overview 1 RT 1: 1235797-1239688 bp Neighborhood of RT #1 [1235797, 1239699] Nudix_Hydrolase_29 COG1373 RVT-UG15 Integrase_DNA Phage_int_SAM_5 Phage_integrase Tn916-Xis Feature: gene Location: 1235797-1236282 bp Feature: domain Description: Nudix_Hydrolase_29 Location: 1235842-1236223 bp Feature: domain Description: Nudix_Hydrolase_29 Location: 1 235842-1 236223 bp Feature: gene Location: 1236286-1236540 bp Feature: domain Description: COG1373 Location: 1236316-1236532 bp Feature: domain Description: COG1 373 Location: 1 23631 6-1 236532 bp Feature: gene Location: 1236814-1238028 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1236952-1237351 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 236952-1 237351 bp Feature: gene Location: 1238197-1239414 bp Feature: domain Description: Integrase_DNA Location: 1238200-1238410 bp Feature: domain Description: Integrase_DNA Location: 1 238200-1 23841 0 bp Feature: domain Description: Phage_int_SAM_5 Location: 1238467-1238719 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 238467-1 23871 9 bp Feature: domain Description: Phage_integrase Location: 1238767-1239346 bp Feature: domain Description: Phage_integrase Location: 1 238767-1 239346 bp Feature: gene Location: 1239496-1239699 bp Feature: domain Description: Tn916-Xis Location: 1239511-1239688 bp Feature: domain Description: Tn91 6-Xis Location: 1 23951 1 -1 239688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nudix_Hydrolase_29 (cd04688), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-UG15, Integrase_DNA (pfam02920), Phage_int_SAM_5 (pfam13102), Phage_integrase (pfam00589), Tn916-Xis (pfam09035)