myRT

myRT report for GCA_013316235.1_ASM1331623v1

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Seq: WSND01000036.1 Lachnospiraceae bacterium isolate RACS_041 NODE_411_length_13277_cov_42.002042, whole genome shotgun sequence (13277 bp)
Overview 1 RT 1: 303-4503 bp Neighborhood of RT #1 [303, 4919] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 HNHc INTN1_C_like TIR_2 Feature: gene Location: 303-1319 bp Feature: domain Description: Arm-DNA-bind_5 Location: 336-591 bp Feature: domain Description: Arm-DNA-bind_5 Location: 336-591 bp Feature: domain Description: Phage_int_SAM_5 Location: 630-936 bp Feature: domain Description: Phage_int_SAM_5 Location: 630-936 bp Feature: domain Description: INTN1_C_like Location: 990-1296 bp Feature: domain Description: INTN1 _C_like Location: 990-1 296 bp Feature: gene Location: 1549-1737 bp Feature: gene Location: 1861-3681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2125-2947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 25-2947 bp Feature: domain Description: Intron_maturas2 Location: 3025-3328 bp Feature: domain Description: Intron_maturas2 Location: 3025-3328 bp Feature: domain Description: HNHc Note: nucleases Location: 3505-3622 bp Feature: domain Description: HNHc Note: nucleases Location: 3505-3622 bp Feature: gene Location: 3686-4018 bp Feature: domain Description: INTN1_C_like Location: 3791-3974 bp Feature: domain Description: INTN1 _C_like Location: 3791 -3974 bp Feature: gene Location: 4134-4919 bp Feature: domain Description: TIR_2 Location: 4140-4503 bp Feature: domain Description: TIR_2 Location: 41 40-4503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), TIR_2 (pfam13676)

Seq: WSND01000038.1 Lachnospiraceae bacterium isolate RACS_041 NODE_418_length_13224_cov_5.721163, whole genome shotgun sequence (13224 bp)
Overview 1 RT 1: 2150-12198 bp Neighborhood of RT #1 [2150, 12206] ispD RVT-GII GIIM COG3666 DDE_Tnp_1_6 COG3666 DDE_Tnp_1_6 RVT-GII GIIM ispD PRK09604 Feature: gene Location: 2150-2917 bp Feature: domain Description: ispD Location: 2156-2909 bp Feature: domain Description: ispD Location: 2 156-2 909 bp Feature: gene Location: 3365-3508 bp Feature: gene Location: 3542-4972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3911-4529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3911-452 9 bp Feature: domain Description: GIIM Note: maturase Location: 4583-4820 bp Feature: domain Description: GIIM Note: maturase Location: 4583-482 0 bp Feature: gene Location: 5069-6472 bp Feature: domain Description: COG3666 Location: 5099-5531 bp Feature: domain Description: COG3666 Location: 5099-5531 bp Feature: domain Description: DDE_Tnp_1_6 Location: 6080-6431 bp Feature: domain Description: DDE_Tnp_1_6 Location: 6080-6431 bp Feature: gene Location: 6753-8156 bp Feature: domain Description: COG3666 Location: 6783-7215 bp Feature: domain Description: COG3666 Location: 6783-72 15 bp Feature: domain Description: DDE_Tnp_1_6 Location: 7764-8115 bp Feature: domain Description: DDE_Tnp_1_6 Location: 7764-8115 bp Feature: gene Location: 8253-9683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8622-9240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862 2 -92 40 bp Feature: domain Description: GIIM Note: maturase Location: 9294-9531 bp Feature: domain Description: GIIM Note: maturase Location: 92 94-9531 bp Feature: gene Location: 10308-11075 bp Feature: domain Description: ispD Location: 10314-11067 bp Feature: domain Description: ispD Location: 10314-11067 bp Feature: gene Location: 11145-12206 bp Feature: domain Description: PRK09604 Location: 11202-12198 bp Feature: domain Description: PRK09604 Location: 112 02 -12 198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ispD (TIGR00453), RVT-GII, GIIM (pfam08388), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), PRK09604 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD)

Seq: WSND01000551.1 Lachnospiraceae bacterium isolate RACS_041 NODE_4609_length_2484_cov_7.575957, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 181-2415 bp Neighborhood of RT #1 [181, 2415] RVT-GII GIIM Feature: gene Location: 181-396 bp Feature: gene Location: 776-1882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 833-1523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 3 -1523 bp Feature: domain Description: GIIM Note: maturase Location: 1583-1805 bp Feature: domain Description: GIIM Note: maturase Location: 1583 -1805 bp Feature: gene Location: 1882-2079 bp Feature: gene Location: 2095-2415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WSND01000097.1 Lachnospiraceae bacterium isolate RACS_041 NODE_976_length_8905_cov_43.081356, whole genome shotgun sequence (8905 bp)
Overview 1 RT 1: 213-1917 bp Neighborhood of RT #1 [213, 1917] RVT-GII Feature: gene Location: 213-563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-534 bp Feature: gene Location: 575-946 bp Feature: gene Location: 1708-1917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII