myRT

myRT report for GCA_013319255.1_ASM1331925v1

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Seq: QOKX01000020.1 Pseudoalteromonas sp. JC28 scaffold20.1, whole genome shotgun sequence (15608 bp)
Overview 1 RT 1: 3816-8888 bp Neighborhood of RT #1 [3816, 8929] Cas2_I_II_III Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cas10_III RAMP_I_III Feature: gene Location: 3816-4091 bp Feature: domain Description: Cas2_I_II_III Location: 3825-4038 bp Feature: domain Description: Cas2_I_II_III Location: 3825-4038 bp Feature: gene Location: 4091-4375 bp Feature: domain Description: Cas2_I_II_III Location: 4106-4316 bp Feature: domain Description: Cas2_I_II_III Location: 41 06-431 6 bp Feature: gene Location: 4372-6420 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4573-5188 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4573-51 88 bp Feature: domain Description: Cas1_I-II-III Location: 5437-6379 bp Feature: domain Description: Cas1 _I-II-III Location: 5437-6379 bp Feature: gene Location: 6597-8321 bp Feature: domain Description: Cas10_III Location: 7209-7830 bp Feature: domain Description: Cas1 0_III Location: 7209-7830 bp Feature: gene Location: 8318-8929 bp Feature: domain Description: RAMP_I_III Location: 8354-8888 bp Feature: domain Description: RAMP_I_III Location: 8354-8888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas10_III (cl21742), RAMP_I_III (cl21471)

Seq: QOKX01000003.1 Pseudoalteromonas sp. JC28 scaffold3.1, whole genome shotgun sequence (509001 bp)
Overview 1 RT 1: 68909-74492 bp Neighborhood of RT #1 [68909, 74492] PRK07041 GrpB RVT_N RVT-GII GIIM Feature: gene Location: 68909-69580 bp Feature: domain Description: PRK07041 Location: 68930-69578 bp Feature: domain Description: PRK07041 Location: 68930-69578 bp Feature: gene Location: 69697-70197 bp Feature: domain Description: GrpB Location: 69715-70189 bp Feature: domain Description: GrpB Location: 69715-70189 bp Feature: gene Location: 71023-72594 bp Feature: domain Description: RVT_N Location: 71170-71413 bp Feature: domain Description: RVT_N Location: 71170-71413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71458-72085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71458-72 085 bp Feature: domain Description: GIIM Note: maturase Location: 72142-72370 bp Feature: domain Description: GIIM Note: maturase Location: 72 142 -72 370 bp Feature: gene Location: 73141-73740 bp Feature: gene Location: 73740-74492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07041 (SDR family oxidoreductase), GrpB (pfam04229), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QOKX01000004.1 Pseudoalteromonas sp. JC28 scaffold4.1, whole genome shotgun sequence (456770 bp)
Overview 1 RT 1: 7430-21181 bp Neighborhood of RT #1 [7430, 21438] NlpD DUF1566 Avd_like RVT-DGRs DUF1566 STKc_PknB_like TPR TPR_12 TPR_12 Feature: gene Location: 7430-15613 bp Feature: domain Description: NlpD Location: 13751-14279 bp Feature: domain Description: NlpD Location: 13 751-14279 bp Feature: domain Description: DUF1566 Location: 15140-15602 bp Feature: domain Description: DUF1566 Location: 15140-15602 bp Feature: gene Location: 15756-16127 bp Feature: domain Description: Avd_like Location: 15780-16092 bp Feature: domain Description: Avd_like Location: 15780-16092 bp Feature: gene Location: 16315-17907 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16576-17305 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16576-173 05 bp Feature: gene Location: 17988-18503 bp Feature: domain Description: DUF1566 Location: 18120-18492 bp Feature: domain Description: DUF1566 Location: 18120-18492 bp Feature: gene Location: 19060-21438 bp Feature: domain Description: STKc_PknB_like Location: 19309-19888 bp Feature: domain Description: STKc_PknB_like Location: 193 09-19888 bp Feature: domain Description: TPR Location: 20329-20614 bp Feature: domain Description: TPR Location: 203 29-20614 bp Feature: domain Description: TPR_12 Location: 20767-20989 bp Feature: domain Description: TPR_12 Location: 20767-20989 bp Feature: domain Description: TPR_12 Location: 21031-21181 bp Feature: domain Description: TPR_12 Location: 2103 1-21181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, STKc_PknB_like (cd14014), TPR (smart00028), TPR_12 (pfam13424)

Seq: QOKX01000009.1 Pseudoalteromonas sp. JC28 scaffold9.1, whole genome shotgun sequence (192390 bp)
Overview 1 RT 1: 183984-190236 bp Neighborhood of RT #1 [183984, 190250] HTH_XRE ImmA RVT-Retrons AAA_15 AAA_15 XerC Feature: gene Location: 183984-184667 bp Feature: gene Location: 184671-185852 bp Feature: domain Description: HTH_XRE Location: 184701-184872 bp Feature: domain Description: HTH_XRE Location: 184 701-184 872 bp Feature: domain Description: ImmA Location: 185079-185670 bp Feature: domain Description: ImmA Location: 185079-185670 bp Feature: gene Location: 185915-187018 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186068-186605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186068-186605 bp Feature: gene Location: 187156-189279 bp Feature: domain Description: AAA_15 Location: 187159-187579 bp Feature: domain Description: AAA_15 Location: 187159-187579 bp Feature: domain Description: AAA_15 Location: 187711-188140 bp Feature: domain Description: AAA_15 Location: 187711-18814 0 bp Feature: gene Location: 189369-190250 bp Feature: domain Description: XerC Location: 189474-190236 bp Feature: domain Description: XerC Location: 1894 74 -190236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), ImmA (COG2856), RVT-Retrons, AAA_15 (pfam13175), XerC (COG4973)