myRT

myRT report for GCA_013321095.1_ASM1332109v1

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Seq: JAAMCX010000003.1 Agrobacterium rhizogenes strain T155/95 T155_95_1, whole genome shotgun sequence (2582498 bp)
Overview 1 RT 1: 1441626-1445682 bp 2 RT 2: 1555586-1560956 bp 3 RT 3: 2125409-2130541 bp Neighborhood of RT #1 [1441626, 1445682] PHA00653 PHA00653 PHA00652 RVT-DGRs DUF5131 Neighborhood of RT #2 [1555586, 1560973] HTH_XRE PRK14975 RVT-UG9 NHase_beta nitrile_alph Neighborhood of RT #3 [2125409, 2130552] RhaT RVT-Retrons YpfH PcpA_C_like PcpA_C_like Feature: gene Location: 1441626-1442558 bp Feature: domain Description: PHA00653 Location: 1441680-1442403 bp Feature: domain Description: PHA00653 Location: 1 441 680-1 442403 bp Feature: domain Description: PHA00653 Location: 1442421-1442553 bp Feature: domain Description: PHA00653 Location: 1 442421 -1 442553 bp Feature: gene Location: 1442603-1442980 bp Feature: domain Description: PHA00652 Location: 1442636-1442975 bp Feature: domain Description: PHA00652 Location: 1 442636-1 442975 bp Feature: gene Location: 1442977-1444347 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1443520-1444111 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 443520-1 4441 1 1 bp Feature: gene Location: 1444340-1445329 bp Feature: domain Description: DUF5131 Location: 1444355-1445297 bp Feature: domain Description: DUF51 31 Location: 1 444355-1 445297 bp Feature: gene Location: 1445329-1445682 bp Feature: gene Location: 1555586-1555834 bp Feature: domain Description: HTH_XRE Location: 1555631-1555793 bp Feature: domain Description: HTH_XRE Location: 1 555631 -1 555793 bp Feature: gene Location: 1556030-1557619 bp Feature: domain Description: PRK14975 Location: 1556363-1557602 bp Feature: domain Description: PRK1 4975 Location: 1 556363-1 557602 bp Feature: gene Location: 1557612-1559273 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1557819-1558467 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1 55781 9-1 558467 bp Feature: gene Location: 1559679-1560344 bp Feature: domain Description: NHase_beta Location: 1559682-1560327 bp Feature: domain Description: NHase_beta Location: 1 559682-1 560327 bp Feature: gene Location: 1560341-1560973 bp Feature: domain Description: nitrile_alph Location: 1560398-1560956 bp Feature: domain Description: nitrile_alph Location: 1 560398-1 560956 bp Feature: gene Location: 2125409-2126305 bp Feature: domain Description: RhaT Location: 2125436-2126252 bp Feature: domain Description: RhaT Location: 21 25436-21 26252 bp Feature: gene Location: 2126524-2126949 bp Feature: gene Location: 2127000-2128295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2127003-2127321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 27003-21 27321 bp Feature: gene Location: 2128992-2129603 bp Feature: domain Description: YpfH Location: 2128995-2129592 bp Feature: domain Description: YpfH Location: 21 28995-21 29592 bp Feature: gene Location: 2129620-2130552 bp Feature: domain Description: PcpA_C_like Location: 2129641-2129917 bp Feature: domain Description: PcpA_C_like Location: 21 29641 -21 2991 7 bp Feature: domain Description: PcpA_C_like Location: 2130079-2130541 bp Feature: domain Description: PcpA_C_like Location: 21 30079-21 30541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), PHA00652 (hypothetical protein), RVT-DGRs, DUF5131 (pfam07505), HTH_XRE (smart00530), PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), RVT-UG9, NHase_beta (pfam02211), nitrile_alph (TIGR01323), RhaT (TIGR00776)
RVT-Retrons, YpfH (COG0400), PcpA_C_like (cd08347)