myRT

myRT report for GCA_013321105.1_ASM1332110v1

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Seq: JAAMCY010000057.1 Agrobacterium rhizogenes strain S32/96 S32_96_28, whole genome shotgun sequence (46744 bp)
Overview 1 RT 1: 20131-24393 bp Neighborhood of RT #1 [20131, 24455] Nitroreductase PRK01229 RVT-Retrons Trypsin_2 HTH_XRE Feature: gene Location: 20131-20799 bp Feature: domain Description: Nitroreductase Location: 20257-20758 bp Feature: domain Description: Nitroreductase Location: 20257-20758 bp Feature: gene Location: 20806-21609 bp Feature: domain Description: PRK01229 Location: 21019-21532 bp Feature: domain Description: PRK01 229 Location: 21 01 9-21 532 bp Feature: gene Location: 21819-23417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21981-22578 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 981 -22578 bp Feature: domain Description: Trypsin_2 Location: 22926-23337 bp Feature: domain Description: Trypsin_2 Location: 22926-23337 bp Feature: gene Location: 23650-23790 bp Feature: gene Location: 24138-24455 bp Feature: domain Description: HTH_XRE Location: 24249-24393 bp Feature: domain Description: HTH_XRE Location: 24249-24393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nitroreductase (pfam00881), PRK01229 (N-glycosylase/DNA lyase; Provisional), RVT-Retrons, Trypsin_2 (pfam13365), HTH_XRE (smart00530)

Seq: JAAMCY010000002.1 Agrobacterium rhizogenes strain S32/96 S32_96_39, whole genome shotgun sequence (21860 bp)
Overview 1 RT 1: 11518-16465 bp Neighborhood of RT #1 [11518, 16482] TraA_Ti COG3547 RVT-AbiP2 Mrr_cat COG3183 Feature: gene Location: 11518-12045 bp Feature: domain Description: TraA_Ti Location: 11566-11731 bp Feature: domain Description: TraA_Ti Location: 11566-11731 bp Feature: domain Description: COG3547 Location: 11788-12007 bp Feature: domain Description: COG3547 Location: 11788-12 007 bp Feature: gene Location: 12114-12344 bp Feature: gene Location: 12840-14336 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 13257-13704 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 132 57-13704 bp Feature: gene Location: 14333-15199 bp Feature: domain Description: Mrr_cat Location: 14789-15101 bp Feature: domain Description: Mrr_cat Location: 14789-15101 bp Feature: gene Location: 15580-16482 bp Feature: domain Description: COG3183 Location: 16162-16465 bp Feature: domain Description: COG3183 Location: 16162 -16465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraA_Ti (TIGR02768), COG3547 (Transposase ), RVT-AbiP2, Mrr_cat (pfam04471), COG3183 (Predicted restriction endonuclease, HNH family )

Seq: JAAMCY010000064.1 Agrobacterium rhizogenes strain S32/96 S32_96_57, whole genome shotgun sequence (2256 bp)
Overview 1 RT 1: 274-1957 bp Neighborhood of RT #1 [274, 2178] RVT-GII GIIM Feature: gene Location: 274-480 bp Feature: gene Location: 649-2178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 922-1657 bp Feature: domain Description: GIIM Note: maturase Location: 1729-1957 bp Feature: domain Description: GIIM Note: maturase Location: 1729-1957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAMCY010000029.1 Agrobacterium rhizogenes strain S32/96 S32_96_6, whole genome shotgun sequence (467121 bp)
Overview 1 RT 1: 239297-242895 bp Neighborhood of RT #1 [239297, 242951] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 239297-239593 bp Feature: domain Description: Rve Location: 239324-239543 bp Feature: domain Description: Rve Location: 239324 -23954 3 bp Feature: gene Location: 239791-239967 bp Feature: gene Location: 240032-241336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240281-240938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 0281-24 0938 bp Feature: domain Description: GIIM Note: maturase Location: 241019-241250 bp Feature: domain Description: GIIM Note: maturase Location: 24 1019-24 1250 bp Feature: gene Location: 241375-241860 bp Feature: domain Description: Rve Location: 241405-241783 bp Feature: domain Description: Rve Location: 24 14 05-24 1783 bp Feature: gene Location: 242259-242951 bp Feature: domain Description: Crp Location: 242289-242895 bp Feature: domain Description: Crp Location: 24 2289-24 2895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)