myRT

myRT report for GCA_013321185.1_ASM1332118v1

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Seq: JAAMDC010000028.1 Agrobacterium rhizogenes strain R 10.1 R_10.1_14, whole genome shotgun sequence (81895 bp)
Overview 1 RT 1: 1275-6391 bp 2 RT 2: 57014-59200 bp Neighborhood of RT #1 [1275, 6391] HTH_XRE RVT-Retrons Neighborhood of RT #2 [57014, 59200] DDE_Tnp_IS240 Rve RVT-GII Feature: gene Location: 1275-1622 bp Feature: gene Location: 1658-1981 bp Feature: domain Description: HTH_XRE Location: 1694-1856 bp Feature: domain Description: HTH_XRE Location: 1 694-1 856 bp Feature: gene Location: 1971-3023 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2151-2658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 51 -2658 bp Feature: gene Location: 3226-3354 bp Feature: gene Location: 3443-6391 bp Feature: gene Location: 57014-57652 bp Feature: domain Description: DDE_Tnp_IS240 Location: 57020-57257 bp Feature: domain Description: DDE_Tnp_IS240 Location: 57020-57257 bp Feature: gene Location: 57662-57931 bp Feature: domain Description: Rve Location: 57671-57920 bp Feature: domain Description: Rve Location: 57671 -57920 bp Feature: gene Location: 57912-58868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58323-58863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58323-58863 bp Feature: gene Location: 58638-58847 bp Feature: gene Location: 58865-59200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, DDE_Tnp_IS240 (pfam13610), Rve (COG3316), RVT-GII

Seq: JAAMDC010000022.1 Agrobacterium rhizogenes strain R 10.1 R_10.1_9, whole genome shotgun sequence (241328 bp)
Overview 1 RT 1: 239140-241093 bp Neighborhood of RT #1 [239140, 241179] Rve RVT-GII GIIM Feature: gene Location: 239140-239436 bp Feature: domain Description: Rve Location: 239167-239386 bp Feature: domain Description: Rve Location: 2 39167-2 39386 bp Feature: gene Location: 239634-239810 bp Feature: gene Location: 239875-241179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240124-240781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4012 4-2 40781 bp Feature: domain Description: GIIM Note: maturase Location: 240862-241093 bp Feature: domain Description: GIIM Note: maturase Location: 2 40862 -2 41093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)