myRT

myRT report for GCA_013321215.1_ASM1332121v1

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Seq: JAAMDD010000026.1 Agrobacterium rhizogenes strain R 1.1 R_1.1_2, whole genome shotgun sequence (959609 bp)
Overview 1 RT 1: 239230-242828 bp Neighborhood of RT #1 [239230, 242884] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 239230-239526 bp Feature: domain Description: Rve Location: 239257-239476 bp Feature: domain Description: Rve Location: 239257-239476 bp Feature: gene Location: 239724-239900 bp Feature: gene Location: 239965-241269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240214-240871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24021 4-240871 bp Feature: domain Description: GIIM Note: maturase Location: 240952-241183 bp Feature: domain Description: GIIM Note: maturase Location: 240952-241 1 83 bp Feature: gene Location: 241308-241793 bp Feature: domain Description: Rve Location: 241338-241719 bp Feature: domain Description: Rve Location: 241 338-241 71 9 bp Feature: gene Location: 242192-242884 bp Feature: domain Description: Crp Location: 242222-242828 bp Feature: domain Description: Crp Location: 242222-242828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JAAMDD010000001.1 Agrobacterium rhizogenes strain R 1.1 R_1.1_26, whole genome shotgun sequence (26912 bp)
Overview 1 RT 1: 16499-21446 bp Neighborhood of RT #1 [16499, 21463] TraA_Ti COG3547 RVT-AbiP2 Mrr_cat COG3183 Feature: gene Location: 16499-17026 bp Feature: domain Description: TraA_Ti Location: 16547-16712 bp Feature: domain Description: TraA_Ti Location: 16547-16712 bp Feature: domain Description: COG3547 Location: 16769-16988 bp Feature: domain Description: COG3547 Location: 16769-16988 bp Feature: gene Location: 17095-17325 bp Feature: gene Location: 17821-19317 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 18238-18685 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 182 38-18685 bp Feature: gene Location: 19314-20180 bp Feature: domain Description: Mrr_cat Location: 19770-20082 bp Feature: domain Description: Mrr_cat Location: 19770-2 0082 bp Feature: gene Location: 20561-21463 bp Feature: domain Description: COG3183 Location: 21143-21446 bp Feature: domain Description: COG3183 Location: 2 1143-2 1446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraA_Ti (TIGR02768), COG3547 (Transposase ), RVT-AbiP2, Mrr_cat (pfam04471), COG3183 (Predicted restriction endonuclease, HNH family )

Seq: JAAMDD010000006.1 Agrobacterium rhizogenes strain R 1.1 R_1.1_4, whole genome shotgun sequence (595903 bp)
Overview 1 RT 1: 584071-588717 bp Neighborhood of RT #1 [584071, 588752] Axe1 RVT-Retrons MTES_1575 Feature: gene Location: 584071-584499 bp Feature: domain Description: Axe1 Location: 584233-584416 bp Feature: domain Description: Axe1 Location: 58423 3 -584416 bp Feature: gene Location: 584509-584775 bp Feature: gene Location: 585080-586795 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 585215-585848 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 585215-585848 bp Feature: gene Location: 587241-587603 bp Feature: gene Location: 587913-588752 bp Feature: domain Description: MTES_1575 Location: 588510-588717 bp Feature: domain Description: MTES_1575 Location: 588510-588717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Axe1 (COG3458), RVT-Retrons, MTES_1575 (pfam18741)

Seq: JAAMDD010000043.1 Agrobacterium rhizogenes strain R 1.1 R_1.1_8, whole genome shotgun sequence (303846 bp)
Overview 1 RT 1: 278348-280534 bp Neighborhood of RT #1 [278348, 280534] DDE_Tnp_IS240 Rve RVT-GII Feature: gene Location: 278348-278986 bp Feature: domain Description: DDE_Tnp_IS240 Location: 278354-278591 bp Feature: domain Description: DDE_Tnp_IS24 0 Location: 278354 -278591 bp Feature: gene Location: 278996-279265 bp Feature: domain Description: Rve Location: 279005-279254 bp Feature: domain Description: Rve Location: 279005-279254 bp Feature: gene Location: 279246-280202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279657-280197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279657-280197 bp Feature: gene Location: 279972-280181 bp Feature: gene Location: 280199-280534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS240 (pfam13610), Rve (COG3316), RVT-GII