myRT

myRT report for GCA_013321315.1_ASM1332131v1

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Seq: JAAMDK010000026.1 Agrobacterium rhizogenes strain M2/73 M2_73_19, whole genome shotgun sequence (74542 bp)
Overview 1 RT 1: 26835-31682 bp Neighborhood of RT #1 [26835, 31682] DEDD_Tnp_IS110 Transposase_20 PHA02517 RVT-GII GIIM Tra5 Feature: gene Location: 26835-28193 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 26892-27318 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 26892-2731 8 bp Feature: domain Description: Transposase_20 Location: 27717-27966 bp Feature: domain Description: Transposase_20 Location: 2771 7-27966 bp Feature: gene Location: 28226-28666 bp Feature: domain Description: PHA02517 Location: 28292-28634 bp Feature: domain Description: PHA0251 7 Location: 28292-28634 bp Feature: gene Location: 29282-30811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29555-30290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29555-30290 bp Feature: domain Description: GIIM Note: maturase Location: 30362-30590 bp Feature: domain Description: GIIM Note: maturase Location: 30362-30590 bp Feature: gene Location: 30960-31337 bp Feature: domain Description: Tra5 Location: 30972-31326 bp Feature: domain Description: Tra5 Location: 30972-31 326 bp Feature: gene Location: 31368-31682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: JAAMDK010000024.1 Agrobacterium rhizogenes strain M2/73 M2_73_2, whole genome shotgun sequence (961121 bp)
Overview 1 RT 1: 239569-243167 bp Neighborhood of RT #1 [239569, 243223] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 239569-239865 bp Feature: domain Description: Rve Location: 239596-239815 bp Feature: domain Description: Rve Location: 2 39596-2 39815 bp Feature: gene Location: 240063-240239 bp Feature: gene Location: 240304-241608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240553-241210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 40553-2 412 10 bp Feature: domain Description: GIIM Note: maturase Location: 241291-241522 bp Feature: domain Description: GIIM Note: maturase Location: 2 412 91-2 4152 2 bp Feature: gene Location: 241785-242132 bp Feature: domain Description: Rve Location: 241794-242058 bp Feature: domain Description: Rve Location: 2 41794-2 42 058 bp Feature: gene Location: 242531-243223 bp Feature: domain Description: Crp Location: 242561-243167 bp Feature: domain Description: Crp Location: 2 42 561-2 43167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JAAMDK010000010.1 Agrobacterium rhizogenes strain M2/73 M2_73_3, whole genome shotgun sequence (796094 bp)
Overview 1 RT 1: 787444-792345 bp Neighborhood of RT #1 [787444, 792398] RVT-UG2 MPP_MS158 Feature: gene Location: 787444-788439 bp Feature: gene Location: 788436-789113 bp Feature: gene Location: 789405-790886 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 789633-790539 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 78963 3 -79053 9 bp Feature: gene Location: 790892-791383 bp Feature: gene Location: 791586-792398 bp Feature: domain Description: MPP_MS158 Location: 791601-792345 bp Feature: domain Description: MPP_MS158 Location: 791601-7923 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, MPP_MS158 (cd07404)