myRT

myRT report for GCA_013321455.1_ASM1332145v1

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Seq: JAAMDS010000038.1 Agrobacterium rhizogenes strain I2/75 I2_75_10, whole genome shotgun sequence (240064 bp)
Overview 1 RT 1: 80863-84954 bp Neighborhood of RT #1 [80863, 84954] RVT-Retrons HTH_XRE Feature: gene Location: 80863-81000 bp Feature: gene Location: 81025-81975 bp Feature: gene Location: 82415-83467 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82595-83105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82595-831 05 bp Feature: gene Location: 83457-83819 bp Feature: domain Description: HTH_XRE Location: 83532-83694 bp Feature: domain Description: HTH_XRE Location: 83532-83694 bp Feature: gene Location: 84376-84954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: JAAMDS010000008.1 Agrobacterium rhizogenes strain I2/75 I2_75_14, whole genome shotgun sequence (154595 bp)
Overview 1 RT 1: 5405-9343 bp Neighborhood of RT #1 [5405, 9343] RVT-UG2 Feature: gene Location: 5405-6400 bp Feature: gene Location: 6397-7074 bp Feature: gene Location: 7366-8847 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 7594-8500 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 7594-8500 bp Feature: gene Location: 8853-9071 bp Feature: gene Location: 9122-9343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: JAAMDS010000035.1 Agrobacterium rhizogenes strain I2/75 I2_75_22, whole genome shotgun sequence (38969 bp)
Overview 1 RT 1: 14615-18759 bp Neighborhood of RT #1 [14615, 18791] Glyoxalase ED_TypeI_classII_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 14615-15451 bp Feature: domain Description: Glyoxalase Location: 14651-14954 bp Feature: domain Description: Glyoxalase Location: 14651-14954 bp Feature: domain Description: ED_TypeI_classII_C Location: 15017-15383 bp Feature: domain Description: ED_TypeI_classII_C Location: 15017-153 83 bp Feature: gene Location: 15681-16376 bp Feature: domain Description: PHA02517 Location: 15918-16365 bp Feature: domain Description: PHA02517 Location: 15918-163 65 bp Feature: gene Location: 16207-17736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16480-17215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16480-17215 bp Feature: domain Description: GIIM Note: maturase Location: 17287-17494 bp Feature: domain Description: GIIM Note: maturase Location: 17287-17494 bp Feature: gene Location: 17905-18111 bp Feature: gene Location: 18351-18791 bp Feature: domain Description: PHA02517 Location: 18417-18759 bp Feature: domain Description: PHA02517 Location: 18417-18759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyoxalase (pfam00903), ED_TypeI_classII_C (cd08343), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JAAMDS010000028.1 Agrobacterium rhizogenes strain I2/75 I2_75_35, whole genome shotgun sequence (2235 bp)
Overview 1 RT 1: 1-2235 bp Neighborhood of RT #1 [1, 2234] Rve RVT-GII GIIM Rve Feature: gene Location: 1-264 bp Feature: domain Description: Rve Location: 4-214 bp Feature: domain Description: Rve Location: 4 -214 bp Feature: gene Location: 462-638 bp Feature: gene Location: 703-2007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1609 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1921 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1921 bp Feature: gene Location: 2046-2234 bp Feature: domain Description: Rve Location: 2076-2235 bp Feature: domain Description: Rve Location: 2076-2235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)