myRT

myRT report for GCA_013321495.1_ASM1332149v1

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Seq: JAAMDT010000001.1 Agrobacterium rhizogenes strain H16/79 H16_79_28, whole genome shotgun sequence (27247 bp)
Overview 1 RT 1: 16745-21692 bp Neighborhood of RT #1 [16745, 21709] TraA_Ti COG3547 RVT-AbiP2 Mrr_cat COG3183 Feature: gene Location: 16745-17272 bp Feature: domain Description: TraA_Ti Location: 16793-16958 bp Feature: domain Description: TraA_Ti Location: 1 6793-1 6958 bp Feature: domain Description: COG3547 Location: 17015-17234 bp Feature: domain Description: COG3547 Location: 1 701 5-1 7234 bp Feature: gene Location: 17341-17571 bp Feature: gene Location: 18067-19563 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 18484-18931 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 8484-1 8931 bp Feature: gene Location: 19560-20426 bp Feature: domain Description: Mrr_cat Location: 20016-20328 bp Feature: domain Description: Mrr_cat Location: 2001 6-20328 bp Feature: gene Location: 20807-21709 bp Feature: domain Description: COG3183 Location: 21389-21692 bp Feature: domain Description: COG31 83 Location: 21 389-21 692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraA_Ti (TIGR02768), COG3547 (Transposase ), RVT-AbiP2, Mrr_cat (pfam04471), COG3183 (Predicted restriction endonuclease, HNH family )

Seq: JAAMDT010000023.1 Agrobacterium rhizogenes strain H16/79 H16_79_4, whole genome shotgun sequence (502565 bp)
Overview 1 RT 1: 238862-242460 bp Neighborhood of RT #1 [238862, 242516] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 238862-239158 bp Feature: domain Description: Rve Location: 238889-239108 bp Feature: domain Description: Rve Location: 2 38889-2 39108 bp Feature: gene Location: 239356-239532 bp Feature: gene Location: 239597-240901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239846-240503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39846-2 40503 bp Feature: domain Description: GIIM Note: maturase Location: 240584-240815 bp Feature: domain Description: GIIM Note: maturase Location: 2 40584-2 40815 bp Feature: gene Location: 240940-241425 bp Feature: domain Description: Rve Location: 240970-241348 bp Feature: domain Description: Rve Location: 2 40970-2 41348 bp Feature: gene Location: 241824-242516 bp Feature: domain Description: Crp Location: 241854-242460 bp Feature: domain Description: Crp Location: 2 41854-2 42 460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)