myRT

myRT report for GCA_013321565.1_ASM1332156v1

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Seq: JAAMDY010000028.1 Agrobacterium rhizogenes strain D10b/87 D10b_87_10, whole genome shotgun sequence (250130 bp)
Overview 1 RT 1: 238955-242553 bp Neighborhood of RT #1 [238955, 242609] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 238955-239251 bp Feature: domain Description: Rve Location: 238982-239201 bp Feature: domain Description: Rve Location: 238982-239201 bp Feature: gene Location: 239449-239625 bp Feature: gene Location: 239690-240994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239939-240596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239939-240596 bp Feature: domain Description: GIIM Note: maturase Location: 240677-240908 bp Feature: domain Description: GIIM Note: maturase Location: 240677-240908 bp Feature: gene Location: 241033-241518 bp Feature: domain Description: Rve Location: 241063-241441 bp Feature: domain Description: Rve Location: 241 063-241 441 bp Feature: gene Location: 241917-242609 bp Feature: domain Description: Crp Location: 241947-242553 bp Feature: domain Description: Crp Location: 241 947-242553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JAAMDY010000023.1 Agrobacterium rhizogenes strain D10b/87 D10b_87_24, whole genome shotgun sequence (83434 bp)
Overview 1 RT 1: 31088-35691 bp Neighborhood of RT #1 [31088, 35691] helD helD zf-C4_Topoisom RVT-Retrons HTH_XRE Feature: gene Location: 31088-33823 bp Feature: domain Description: helD Location: 31229-32027 bp Feature: domain Description: helD Location: 312 2 9-32 02 7 bp Feature: domain Description: helD Location: 32720-33659 bp Feature: domain Description: helD Location: 32 72 0-33659 bp Feature: domain Description: zf-C4_Topoisom Location: 33710-33812 bp Feature: domain Description: zf-C4_Topoisom Location: 33710-33812 bp Feature: gene Location: 33781-33984 bp Feature: gene Location: 33989-35041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34169-34676 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34169-34676 bp Feature: gene Location: 35031-35354 bp Feature: domain Description: HTH_XRE Location: 35067-35229 bp Feature: domain Description: HTH_XRE Location: 35067-352 2 9 bp Feature: gene Location: 35389-35691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT helD (PRK11054), zf-C4_Topoisom (pfam01396), RVT-Retrons, HTH_XRE (smart00530)

Seq: JAAMDY010000040.1 Agrobacterium rhizogenes strain D10b/87 D10b_87_31, whole genome shotgun sequence (30625 bp)
Overview 1 RT 1: 8471-12733 bp Neighborhood of RT #1 [8471, 12795] Nitroreductase PRK01229 RVT-Retrons Trypsin_2 HTH_XRE Feature: gene Location: 8471-9139 bp Feature: domain Description: Nitroreductase Location: 8597-9098 bp Feature: domain Description: Nitroreductase Location: 8597-9098 bp Feature: gene Location: 9146-9919 bp Feature: domain Description: PRK01229 Location: 9329-9842 bp Feature: domain Description: PRK01229 Location: 93 29-9842 bp Feature: gene Location: 10159-11757 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10321-10918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103 21-10918 bp Feature: domain Description: Trypsin_2 Location: 11266-11677 bp Feature: domain Description: Trypsin_2 Location: 11266-11677 bp Feature: gene Location: 11990-12130 bp Feature: gene Location: 12478-12795 bp Feature: domain Description: HTH_XRE Location: 12589-12733 bp Feature: domain Description: HTH_XRE Location: 12589-1273 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), HTH_XRE (smart00530), Nitroreductase (pfam00881), PRK01229 (N-glycosylase/DNA lyase; Provisional)

Seq: JAAMDY010000046.1 Agrobacterium rhizogenes strain D10b/87 D10b_87_42, whole genome shotgun sequence (2253 bp)
Overview 1 RT 1: 75-1982 bp Neighborhood of RT #1 [75, 1982] RVT-GII GIIM Feature: gene Location: 75-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 8-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1383 bp Feature: gene Location: 1773-1982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)