myRT

myRT report for GCA_013321715.1_ASM1332171v1

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Seq: JAAMEB010000026.1 Agrobacterium rhizogenes strain D1/94 D1_94_10, whole genome shotgun sequence (250037 bp)
Overview 1 RT 1: 238862-242460 bp Neighborhood of RT #1 [238862, 242516] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 238862-239158 bp Feature: domain Description: Rve Location: 238889-239108 bp Feature: domain Description: Rve Location: 238889-2391 08 bp Feature: gene Location: 239356-239532 bp Feature: gene Location: 239597-240901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239846-240503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239846-240503 bp Feature: domain Description: GIIM Note: maturase Location: 240584-240815 bp Feature: domain Description: GIIM Note: maturase Location: 240584-24081 5 bp Feature: gene Location: 240940-241425 bp Feature: domain Description: Rve Location: 240970-241348 bp Feature: domain Description: Rve Location: 240970-241 348 bp Feature: gene Location: 241824-242516 bp Feature: domain Description: Crp Location: 241854-242460 bp Feature: domain Description: Crp Location: 241 854-242460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JAAMEB010000021.1 Agrobacterium rhizogenes strain D1/94 D1_94_21, whole genome shotgun sequence (83434 bp)
Overview 1 RT 1: 31088-35691 bp Neighborhood of RT #1 [31088, 35691] helD helD zf-C4_Topoisom RVT-Retrons HTH_XRE Feature: gene Location: 31088-33823 bp Feature: domain Description: helD Location: 31229-32027 bp Feature: domain Description: helD Location: 312 2 9-32 02 7 bp Feature: domain Description: helD Location: 32720-33659 bp Feature: domain Description: helD Location: 32 72 0-33659 bp Feature: domain Description: zf-C4_Topoisom Location: 33710-33812 bp Feature: domain Description: zf-C4_Topoisom Location: 33710-33812 bp Feature: gene Location: 33781-33984 bp Feature: gene Location: 33989-35041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34169-34676 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34169-34676 bp Feature: gene Location: 35031-35354 bp Feature: domain Description: HTH_XRE Location: 35067-35229 bp Feature: domain Description: HTH_XRE Location: 35067-352 2 9 bp Feature: gene Location: 35389-35691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT helD (PRK11054), zf-C4_Topoisom (pfam01396), RVT-Retrons, HTH_XRE (smart00530)

Seq: JAAMEB010000037.1 Agrobacterium rhizogenes strain D1/94 D1_94_29, whole genome shotgun sequence (30541 bp)
Overview 1 RT 1: 8387-12649 bp Neighborhood of RT #1 [8387, 12711] Nitroreductase PRK01229 RVT-Retrons Trypsin_2 HTH_XRE Feature: gene Location: 8387-9055 bp Feature: domain Description: Nitroreductase Location: 8513-9014 bp Feature: domain Description: Nitroreductase Location: 8513 -9014 bp Feature: gene Location: 9062-9835 bp Feature: domain Description: PRK01229 Location: 9245-9758 bp Feature: domain Description: PRK01229 Location: 9245-9758 bp Feature: gene Location: 10075-11673 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10237-10834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1023 7-1083 4 bp Feature: domain Description: Trypsin_2 Location: 11182-11593 bp Feature: domain Description: Trypsin_2 Location: 11182-11593 bp Feature: gene Location: 11906-12046 bp Feature: gene Location: 12394-12711 bp Feature: domain Description: HTH_XRE Location: 12505-12649 bp Feature: domain Description: HTH_XRE Location: 12505-12649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), HTH_XRE (smart00530), Nitroreductase (pfam00881), PRK01229 (N-glycosylase/DNA lyase; Provisional)

Seq: JAAMEB010000043.1 Agrobacterium rhizogenes strain D1/94 D1_94_40, whole genome shotgun sequence (2253 bp)
Overview 1 RT 1: 75-1982 bp Neighborhood of RT #1 [75, 1982] RVT-GII GIIM Feature: gene Location: 75-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 8-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1383 bp Feature: gene Location: 1773-1982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)