myRT

myRT report for GCA_013321775.1_ASM1332177v1

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Seq: JAAMEF010000023.1 Agrobacterium rhizogenes strain CM79/95 CM79_95_2, whole genome shotgun sequence (959320 bp)
Overview 1 RT 1: 238942-242540 bp Neighborhood of RT #1 [238942, 242596] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 238942-239238 bp Feature: domain Description: Rve Location: 238969-239188 bp Feature: domain Description: Rve Location: 238969-2391 88 bp Feature: gene Location: 239436-239612 bp Feature: gene Location: 239677-240981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239926-240583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239926-240583 bp Feature: domain Description: GIIM Note: maturase Location: 240664-240895 bp Feature: domain Description: GIIM Note: maturase Location: 240664-240895 bp Feature: gene Location: 241020-241505 bp Feature: domain Description: Rve Location: 241050-241431 bp Feature: domain Description: Rve Location: 241 050-241 431 bp Feature: gene Location: 241904-242596 bp Feature: domain Description: Crp Location: 241934-242540 bp Feature: domain Description: Crp Location: 241 934-242540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JAAMEF010000029.1 Agrobacterium rhizogenes strain CM79/95 CM79_95_30, whole genome shotgun sequence (16136 bp)
Overview 1 RT 1: 1224-6340 bp Neighborhood of RT #1 [1224, 6340] HTH_XRE RVT-Retrons Feature: gene Location: 1224-1571 bp Feature: gene Location: 1607-1930 bp Feature: domain Description: HTH_XRE Location: 1643-1805 bp Feature: domain Description: HTH_XRE Location: 1643-1805 bp Feature: gene Location: 1920-2972 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2100-2607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 100-2 607 bp Feature: gene Location: 3175-3303 bp Feature: gene Location: 3392-6340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: JAAMEF010000008.1 Agrobacterium rhizogenes strain CM79/95 CM79_95_9, whole genome shotgun sequence (257883 bp)
Overview 1 RT 1: 235440-241919 bp Neighborhood of RT #1 [235440, 242011] PRK06172 RVT-UG12 HTH_3 ImmA NT_2-5OAS_ClassI-CCAase PRK13300 Feature: gene Location: 235440-236219 bp Feature: domain Description: PRK06172 Location: 235476-236217 bp Feature: domain Description: PRK06172 Location: 23 5476-23 6217 bp Feature: gene Location: 236550-237308 bp Feature: gene Location: 237938-239659 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 238268-238712 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 23 8268-23 8712 bp Feature: gene Location: 239838-240893 bp Feature: domain Description: HTH_3 Location: 239856-240018 bp Feature: domain Description: HTH_3 Location: 23 9856-240018 bp Feature: domain Description: ImmA Location: 240225-240726 bp Feature: domain Description: ImmA Location: 240225-240726 bp Feature: gene Location: 241067-242011 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 241136-241571 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 24113 6-241571 bp Feature: domain Description: PRK13300 Location: 241733-241919 bp Feature: domain Description: PRK13 3 00 Location: 24173 3 -241919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06172 (SDR family oxidoreductase), RVT-UG12, HTH_3 (pfam01381), ImmA (COG2856), NT_2-5OAS_ClassI-CCAase (cd05400), PRK13300 (CCA tRNA nucleotidyltransferase)