myRT

myRT report for GCA_013322135.1_ASM1332213v1

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Seq: JAAMEW010000036.1 Agrobacterium rhizogenes strain A1/90 A1_90_26, whole genome shotgun sequence (39832 bp)
Overview 1 RT 1: 865-4493 bp Neighborhood of RT #1 [865, 4493] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 865-1134 bp Feature: domain Description: InsE Location: 877-1126 bp Feature: domain Description: InsE Location: 877-1 1 26 bp Feature: gene Location: 1131-1571 bp Feature: domain Description: PHA02517 Location: 1197-1539 bp Feature: domain Description: PHA0251 7 Location: 1 1 97-1 539 bp Feature: gene Location: 2186-3715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2459-3194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2459-31 94 bp Feature: domain Description: GIIM Note: maturase Location: 3266-3473 bp Feature: domain Description: GIIM Note: maturase Location: 3266-3473 bp Feature: gene Location: 3546-4241 bp Feature: domain Description: PHA02517 Location: 3783-4230 bp Feature: domain Description: PHA0251 7 Location: 3783-4230 bp Feature: gene Location: 4272-4493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JAAMEW010000032.1 Agrobacterium rhizogenes strain A1/90 A1_90_7, whole genome shotgun sequence (466701 bp)
Overview 1 RT 1: 238855-242453 bp Neighborhood of RT #1 [238855, 242509] Rve RVT-GII GIIM Rve Crp Feature: gene Location: 238855-239151 bp Feature: domain Description: Rve Location: 238882-239101 bp Feature: domain Description: Rve Location: 2 38882 -2 39101 bp Feature: gene Location: 239349-239525 bp Feature: gene Location: 239590-240894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239839-240496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39839-2 40496 bp Feature: domain Description: GIIM Note: maturase Location: 240577-240808 bp Feature: domain Description: GIIM Note: maturase Location: 2 40577-2 40808 bp Feature: gene Location: 240933-241418 bp Feature: domain Description: Rve Location: 240963-241344 bp Feature: domain Description: Rve Location: 2 40963-2 41344 bp Feature: gene Location: 241817-242509 bp Feature: domain Description: Crp Location: 241847-242453 bp Feature: domain Description: Crp Location: 2 41847-2 42 453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: JAAMEW010000012.1 Agrobacterium rhizogenes strain A1/90 A1_90_8, whole genome shotgun sequence (435053 bp)
Overview 1 RT 1: 45516-51232 bp Neighborhood of RT #1 [45516, 51324] DUF4393 RVT-UG12 HTH_3 ImmA NT_2-5OAS_ClassI-CCAase PRK13300 Feature: gene Location: 45516-46427 bp Feature: gene Location: 46452-47216 bp Feature: domain Description: DUF4393 Location: 46647-47199 bp Feature: domain Description: DUF43 93 Location: 46647-47199 bp Feature: gene Location: 47244-48977 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 47565-48018 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 47565-48018 bp Feature: gene Location: 49151-50206 bp Feature: domain Description: HTH_3 Location: 49169-49331 bp Feature: domain Description: HTH_3 Location: 49169-493 3 1 bp Feature: domain Description: ImmA Location: 49538-50039 bp Feature: domain Description: ImmA Location: 4953 8-5003 9 bp Feature: gene Location: 50380-51324 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 50449-50881 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 50449-50881 bp Feature: domain Description: PRK13300 Location: 51046-51232 bp Feature: domain Description: PRK13 3 00 Location: 51046-5123 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4393 (pfam14337), RVT-UG12, HTH_3 (pfam01381), ImmA (COG2856), NT_2-5OAS_ClassI-CCAase (cd05400), PRK13300 (CCA tRNA nucleotidyltransferase)