myRT

myRT report for GCA_013322165.1_ASM1332216v1

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Seq: JAAMFA010000038.1 Agrobacterium rhizogenes strain 17-2069-2b NODE_15_length_154663_cov_12.1388_ID_29, whole genome shotgun sequence (154663 bp)
Overview 1 RT 1: 39115-44588 bp Neighborhood of RT #1 [39115, 45259] RVT-Retrons Trypsin_2 N6_Mtase TaqI_C Feature: gene Location: 39115-39354 bp Feature: gene Location: 39642-39776 bp Feature: gene Location: 39959-41554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40124-40718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401 24-4071 8 bp Feature: domain Description: Trypsin_2 Location: 41072-41474 bp Feature: domain Description: Trypsin_2 Location: 41 072-41 474 bp Feature: gene Location: 41729-42064 bp Feature: gene Location: 42158-45259 bp Feature: domain Description: N6_Mtase Location: 43052-43817 bp Feature: domain Description: N6_Mtase Location: 43052-4381 7 bp Feature: domain Description: TaqI_C Location: 44330-44588 bp Feature: domain Description: TaqI_C Location: 44330-44588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), N6_Mtase (pfam02384), TaqI_C (pfam12950)

Seq: JAAMFA010000047.1 Agrobacterium rhizogenes strain 17-2069-2b NODE_26_length_44434_cov_19.8245_ID_51, whole genome shotgun sequence (44434 bp)
Overview 1 RT 1: 20407-24742 bp Neighborhood of RT #1 [20407, 24742] Nramp RVT_N RVT-GII YkfC COG3547 Feature: gene Location: 20407-21705 bp Feature: domain Description: Nramp Location: 20527-21619 bp Feature: domain Description: Nramp Location: 2 052 7-2 1619 bp Feature: gene Location: 21919-22323 bp Feature: gene Location: 22484-24091 bp Feature: RT Description: RVT_N Location: 22655-22895 bp Feature: RT Description: RVT_N Location: 2 2 655-2 2 895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22943-23585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 943-2 3585 bp Feature: domain Description: YkfC Location: 23666-23870 bp Feature: domain Description: YkfC Location: 2 3666-2 3870 bp Feature: gene Location: 24207-24431 bp Feature: domain Description: COG3547 Location: 24216-24369 bp Feature: domain Description: COG3547 Location: 2 42 16-2 4369 bp Feature: gene Location: 24443-24742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nramp (pfam01566), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG3547 (Transposase )

Seq: JAAMFA010000031.1 Agrobacterium rhizogenes strain 17-2069-2b NODE_33_length_22208_cov_22.2693_ID_65, whole genome shotgun sequence (22208 bp)
Overview 1 RT 1: 14126-18099 bp Neighborhood of RT #1 [14126, 18137] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII YkfC COG3436 TnpB_IS66 Feature: gene Location: 14126-14605 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14300-14441 bp Feature: domain Description: DDE_Tnp_IS66 Location: 143 00-14441 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14462-14573 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14462-14573 bp Feature: gene Location: 14646-14798 bp Feature: gene Location: 15042-16580 bp Feature: RT Description: RVT_N Location: 15093-15318 bp Feature: RT Description: RVT_N Location: 15093 -153 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15381-16017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 81-16017 bp Feature: domain Description: YkfC Location: 16098-16356 bp Feature: domain Description: YkfC Location: 16098-163 56 bp Feature: gene Location: 17196-17942 bp Feature: domain Description: COG3436 Location: 17490-17931 bp Feature: domain Description: COG3 43 6 Location: 17490-1793 1 bp Feature: gene Location: 17994-18137 bp Feature: domain Description: TnpB_IS66 Location: 18000-18099 bp Feature: domain Description: TnpB_IS66 Location: 18000-18099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG3436 (Transposase ), TnpB_IS66 (pfam05717)

Seq: JAAMFA010000008.1 Agrobacterium rhizogenes strain 17-2069-2b NODE_45_length_1319_cov_45.5689_ID_89, whole genome shotgun sequence (1319 bp)
Overview 1 RT 1: 39-1314 bp Neighborhood of RT #1 [39, 1316] RVT-GII Feature: gene Location: 39-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII