myRT

myRT report for GCA_013322215.1_ASM1332221v1

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Seq: JAAMEZ010000029.1 Agrobacterium rhizogenes strain 17-2069-2c NODE_15_length_154663_cov_17.3135_ID_29, whole genome shotgun sequence (154663 bp)
Overview 1 RT 1: 39115-44588 bp Neighborhood of RT #1 [39115, 45259] RVT-Retrons Trypsin_2 N6_Mtase TaqI_C Feature: gene Location: 39115-39354 bp Feature: gene Location: 39642-39776 bp Feature: gene Location: 39959-41554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40124-40718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401 24-4071 8 bp Feature: domain Description: Trypsin_2 Location: 41072-41474 bp Feature: domain Description: Trypsin_2 Location: 41 072-41 474 bp Feature: gene Location: 41729-42064 bp Feature: gene Location: 42158-45259 bp Feature: domain Description: N6_Mtase Location: 43052-43817 bp Feature: domain Description: N6_Mtase Location: 43052-4381 7 bp Feature: domain Description: TaqI_C Location: 44330-44588 bp Feature: domain Description: TaqI_C Location: 44330-44588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), N6_Mtase (pfam02384), TaqI_C (pfam12950)

Seq: JAAMEZ010000025.1 Agrobacterium rhizogenes strain 17-2069-2c NODE_25_length_44434_cov_28.8564_ID_49, whole genome shotgun sequence (44434 bp)
Overview 1 RT 1: 20407-24742 bp Neighborhood of RT #1 [20407, 24742] Nramp RVT_N RVT-GII YkfC COG3547 Feature: gene Location: 20407-21705 bp Feature: domain Description: Nramp Location: 20527-21619 bp Feature: domain Description: Nramp Location: 2 052 7-2 1619 bp Feature: gene Location: 21919-22323 bp Feature: gene Location: 22484-24091 bp Feature: RT Description: RVT_N Location: 22655-22895 bp Feature: RT Description: RVT_N Location: 2 2 655-2 2 895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22943-23585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 943-2 3585 bp Feature: domain Description: YkfC Location: 23666-23870 bp Feature: domain Description: YkfC Location: 2 3666-2 3870 bp Feature: gene Location: 24207-24431 bp Feature: domain Description: COG3547 Location: 24216-24369 bp Feature: domain Description: COG3547 Location: 2 42 16-2 4369 bp Feature: gene Location: 24443-24742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nramp (pfam01566), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG3547 (Transposase )

Seq: JAAMEZ010000007.1 Agrobacterium rhizogenes strain 17-2069-2c NODE_32_length_22208_cov_29.1099_ID_63, whole genome shotgun sequence (22208 bp)
Overview 1 RT 1: 4267-8051 bp Neighborhood of RT #1 [4267, 8083] COG3436 RVT_N RVT-GII YkfC DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 4267-5013 bp Feature: domain Description: COG3436 Location: 4561-5002 bp Feature: domain Description: COG3 43 6 Location: 4561-5002 bp Feature: gene Location: 5261-5470 bp Feature: gene Location: 5629-7167 bp Feature: RT Description: RVT_N Location: 5680-5905 bp Feature: RT Description: RVT_N Location: 5680-5905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5968-6604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5968-6604 bp Feature: domain Description: YkfC Location: 6685-6943 bp Feature: domain Description: YkfC Location: 6685-6943 bp Feature: gene Location: 7411-7563 bp Feature: gene Location: 7604-8083 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7778-7919 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7778-7919 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7940-8051 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7940-8051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: JAAMEZ010000009.1 Agrobacterium rhizogenes strain 17-2069-2c NODE_48_length_1319_cov_65.1393_ID_95, whole genome shotgun sequence (1319 bp)
Overview 1 RT 1: 39-1314 bp Neighborhood of RT #1 [39, 1316] RVT-GII Feature: gene Location: 39-1316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII