myRT

myRT report for GCA_013322225.1_ASM1332222v1

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Seq: JAAMFB010000012.1 Agrobacterium larrymoorei strain FPH-AR2 FPH-AR2_13, whole genome shotgun sequence (141074 bp)
Overview 1 RT 1: 2-4316 bp Neighborhood of RT #1 [2, 4321] IstB_IS21 RVT-GII GIIM PHA02517 KdsA Feature: gene Location: 2-361 bp Feature: domain Description: IstB_IS21 Location: 11-314 bp Feature: domain Description: IstB_IS21 Location: 1 1 -31 4 bp Feature: gene Location: 492-770 bp Feature: gene Location: 953-2482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226-1961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 226-1 961 bp Feature: domain Description: GIIM Note: maturase Location: 2033-2261 bp Feature: domain Description: GIIM Note: maturase Location: 2033-2261 bp Feature: gene Location: 2583-3041 bp Feature: domain Description: PHA02517 Location: 2586-3039 bp Feature: domain Description: PHA0251 7 Location: 2586-3039 bp Feature: gene Location: 3473-4321 bp Feature: domain Description: KdsA Location: 3521-4316 bp Feature: domain Description: KdsA Location: 3521 -431 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), KdsA (COG2877)

Seq: JAAMFB010000028.1 Agrobacterium larrymoorei strain FPH-AR2 FPH-AR2_24, whole genome shotgun sequence (70121 bp)
Overview 1 RT 1: 70-5061 bp Neighborhood of RT #1 [70, 5075] RVT-UG9 COG3293 COG3293 MopB_Nitrate-R-NapA-like formate-DH-alph NirB Feature: gene Location: 70-774 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 100-733 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 100-733 bp Feature: gene Location: 761-1606 bp Feature: domain Description: COG3293 Location: 824-1187 bp Feature: domain Description: COG32 93 Location: 82 4-1187 bp Feature: domain Description: COG3293 Location: 1199-1571 bp Feature: domain Description: COG32 93 Location: 1199-1571 bp Feature: gene Location: 2418-5075 bp Feature: domain Description: MopB_Nitrate-R-NapA-like Location: 2436-4119 bp Feature: domain Description: MopB_Nitrate-R-NapA-like Location: 2 436-4119 bp Feature: domain Description: formate-DH-alph Location: 4149-4491 bp Feature: domain Description: formate-DH-alph Location: 4149-4491 bp Feature: domain Description: NirB Location: 4878-5061 bp Feature: domain Description: NirB Location: 4878-5061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, COG3293 (Transposase ), MopB_Nitrate-R-NapA-like (cd02754), formate-DH-alph (TIGR01553), NirB (COG1251)

Seq: JAAMFB010000039.1 Agrobacterium larrymoorei strain FPH-AR2 FPH-AR2_35, whole genome shotgun sequence (21421 bp)
Overview 1 RT 1: 415-7518 bp Neighborhood of RT #1 [415, 7544] BRR2 DUF1837 RVT-UG2 PinE HTH_LUXR Feature: gene Location: 415-2949 bp Feature: domain Description: BRR2 Location: 874-2176 bp Feature: domain Description: BRR2 Location: 874-2176 bp Feature: gene Location: 2946-3959 bp Feature: domain Description: DUF1837 Location: 3159-3903 bp Feature: domain Description: DUF183 7 Location: 3 159-3 903 bp Feature: gene Location: 4069-5505 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4246-5161 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4246-5161 bp Feature: gene Location: 6099-6668 bp Feature: domain Description: PinE Location: 6102-6648 bp Feature: domain Description: PinE Location: 6102-6648 bp Feature: gene Location: 6807-7544 bp Feature: domain Description: HTH_LUXR Location: 7377-7518 bp Feature: domain Description: HTH_LUXR Location: 73 77-7518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BRR2 (COG1204), DUF1837 (pfam08878), RVT-UG2, PinE (COG1961), HTH_LUXR (smart00421)

Seq: JAAMFB010000003.1 Agrobacterium larrymoorei strain FPH-AR2 FPH-AR2_7, whole genome shotgun sequence (244184 bp)
Overview 1 RT 1: 185089-191389 bp Neighborhood of RT #1 [185089, 191400] bac_FRK RVT-UG12 pgi PRK07059 Feature: gene Location: 185089-186015 bp Feature: domain Description: bac_FRK Location: 185092-185983 bp Feature: domain Description: bac_FRK Location: 185092-185983 bp Feature: gene Location: 186278-186565 bp Feature: gene Location: 186076-187761 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 186481-186904 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1864 81-186904 bp Feature: gene Location: 187957-189582 bp Feature: domain Description: pgi Location: 187969-189568 bp Feature: domain Description: pgi Location: 187969-189568 bp Feature: gene Location: 189688-191400 bp Feature: domain Description: PRK07059 Location: 189733-191389 bp Feature: domain Description: PRK07059 Location: 189733-191389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bac_FRK (cd01167), RVT-UG12, pgi (PRK14097), PRK07059 (Long-chain-fatty-acid--CoA ligase; Validated)