myRT

myRT report for GCA_013327835.1_ASM1332783v1

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Seq: JABUHV010000010.1 Bacteroides fragilis strain PP971, whole genome shotgun sequence (190437 bp)
Overview 1 RT 1: 78465-87430 bp Neighborhood of RT #1 [78465, 87432] RNase_Z rpsA RVT-Retrons RVT-Retrons GlnA3 Feature: gene Location: 78465-79379 bp Feature: domain Description: RNase_Z Location: 78480-79371 bp Feature: domain Description: RNase_Z Location: 78480-79371 bp Feature: gene Location: 79529-81322 bp Feature: domain Description: rpsA Location: 79607-81215 bp Feature: domain Description: rpsA Location: 79607-81 21 5 bp Feature: gene Location: 81464-82015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81467-81767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 467-81 767 bp Feature: gene Location: 82020-82577 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82335-82554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82335-82554 bp Feature: gene Location: 82784-85003 bp Feature: gene Location: 85243-87432 bp Feature: domain Description: GlnA3 Location: 85318-87430 bp Feature: domain Description: GlnA3 Location: 8531 8-87430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: JABUHV010000003.1 Bacteroides fragilis strain PP971, whole genome shotgun sequence (349128 bp)
Overview 1 RT 1: 28042-30058 bp 2 RT 2: 335277-343101 bp Neighborhood of RT #1 [28042, 30058] RVT-GII HTH_28 Neighborhood of RT #2 [335277, 343190] matK RVT-GII Intron_maturas2 COG4646 Helicase_C PRK13351 PRK13351 Feature: gene Location: 28042-28404 bp Feature: gene Location: 28408-28617 bp Feature: gene Location: 28647-28844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28650-28842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8650-2 8842 bp Feature: gene Location: 28965-29255 bp Feature: domain Description: HTH_28 Location: 28989-29136 bp Feature: domain Description: HTH_2 8 Location: 2 8989-2 9136 bp Feature: gene Location: 29684-30058 bp Feature: gene Location: 335277-335474 bp Feature: gene Location: 335652-335921 bp Feature: gene Location: 336027-337829 bp Feature: domain Description: matK Location: 336096-336183 bp Feature: domain Description: matK Location: 336096-336183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336291-337113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3362 91-337113 bp Feature: domain Description: Intron_maturas2 Location: 337263-337497 bp Feature: domain Description: Intron_maturas2 Location: 3372 63-337497 bp Feature: gene Location: 337816-340581 bp Feature: domain Description: COG4646 Location: 337930-339070 bp Feature: domain Description: COG4646 Location: 337930-339070 bp Feature: domain Description: Helicase_C Location: 339283-339481 bp Feature: domain Description: Helicase_C Location: 3392 83-339481 bp Feature: gene Location: 341196-343190 bp Feature: domain Description: PRK13351 Location: 341244-341715 bp Feature: domain Description: PRK13351 Location: 3412 44-341715 bp Feature: domain Description: PRK13351 Location: 341760-343101 bp Feature: domain Description: PRK13351 Location: 341760-343101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), matK (CHL00002), Intron_maturas2 (pfam01348), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), PRK13351 (elongation factor G-like protein)

Seq: JABUHV010000053.1 Bacteroides fragilis strain PP971, whole genome shotgun sequence (4884 bp)
Overview 1 RT 1: 1-4848 bp Neighborhood of RT #1 [1, 4883] AAA_10 RVT-GII AAA_10 Feature: gene Location: 1-894 bp Feature: gene Location: 894-1733 bp Feature: domain Description: AAA_10 Location: 897-1695 bp Feature: domain Description: AAA_10 Location: 897-1695 bp Feature: gene Location: 1944-3776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2244-2943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2244-2943 bp Feature: gene Location: 4473-4883 bp Feature: domain Description: AAA_10 Location: 4662-4848 bp Feature: domain Description: AAA_10 Location: 4662-4848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA_10 (pfam12846)