myRT

myRT report for GCA_013328355.1_ASM1332835v1

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Seq: JABUGF010000012.1 Pseudomonas aeruginosa strain ROUE19 ctg_ROUE19_12, whole genome shotgun sequence (192232 bp)
Overview 1 RT 1: 50498-55461 bp Neighborhood of RT #1 [50498, 55496] RVT-UG5 YgiQ DUF4823 Feature: gene Location: 50498-53674 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 51035-51533 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 51 035-51 533 bp Feature: gene Location: 54026-54799 bp Feature: domain Description: YgiQ Location: 54041-54701 bp Feature: domain Description: YgiQ Location: 54041 -54701 bp Feature: gene Location: 54864-55496 bp Feature: domain Description: DUF4823 Location: 55020-55461 bp Feature: domain Description: DUF4823 Location: 55020-55461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, YgiQ (COG1032), DUF4823 (pfam16105)

Seq: JABUGF010000016.1 Pseudomonas aeruginosa strain ROUE19 ctg_ROUE19_16, whole genome shotgun sequence (145905 bp)
Overview 1 RT 1: 49289-58130 bp Neighborhood of RT #1 [49289, 58138] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 49289-49963 bp Feature: domain Description: NTP_transferase_like_1 Location: 49295-49934 bp Feature: domain Description: NTP_transferase_like_1 Location: 492 95-49934 bp Feature: gene Location: 49960-50976 bp Feature: domain Description: COG3178 Location: 49963-50962 bp Feature: domain Description: COG3178 Location: 49963-50962 bp Feature: gene Location: 52249-53961 bp Feature: domain Description: RVT_N Location: 52306-52549 bp Feature: domain Description: RVT_N Location: 52 306-52 549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52594-53230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 594-532 30 bp Feature: domain Description: YkfC Location: 53437-53590 bp Feature: domain Description: YkfC Location: 53437-53590 bp Feature: domain Description: HNH Note: nucleases Location: 53767-53905 bp Feature: domain Description: HNH Note: nucleases Location: 53767-53905 bp Feature: gene Location: 54094-56865 bp Feature: domain Description: LptD Location: 54289-56851 bp Feature: domain Description: LptD Location: 542 89-56851 bp Feature: gene Location: 56924-58138 bp Feature: domain Description: PRK10770 Location: 56936-58130 bp Feature: domain Description: PRK10770 Location: 56936-58130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: JABUGF010000006.1 Pseudomonas aeruginosa strain ROUE19 ctg_ROUE19_6, whole genome shotgun sequence (359240 bp)
Overview 1 RT 1: 295583-303504 bp Neighborhood of RT #1 [295583, 303506] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0387 SF2_C_SNF umuC Feature: gene Location: 295583-297028 bp Feature: domain Description: AdoMet_MTases Location: 295706-296072 bp Feature: domain Description: AdoMet_MTases Location: 295706-296072 bp Feature: gene Location: 297127-298158 bp Feature: domain Description: DEXHc_Snf Location: 297325-297571 bp Feature: domain Description: DEXHc_Snf Location: 2973 25-297571 bp Feature: gene Location: 298755-300473 bp Feature: domain Description: RVT_N Location: 298812-299049 bp Feature: domain Description: RVT_N Location: 298812-299049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299100-299751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299100-299751 bp Feature: domain Description: GIIM Note: maturase Location: 299805-300036 bp Feature: domain Description: GIIM Note: maturase Location: 299805-3 0003 6 bp Feature: domain Description: HNHc Note: nucleases Location: 300270-300426 bp Feature: domain Description: HNHc Note: nucleases Location: 3 00270-3 00426 bp Feature: gene Location: 300541-301800 bp Feature: domain Description: KOG0387 Location: 300580-300706 bp Feature: domain Description: KOG03 87 Location: 3 00580-3 00706 bp Feature: domain Description: SF2_C_SNF Location: 301255-301636 bp Feature: domain Description: SF2_C_SNF Location: 3 01255-3 0163 6 bp Feature: gene Location: 302484-303506 bp Feature: domain Description: umuC Location: 302487-303504 bp Feature: domain Description: umuC Location: 3 02487-3 03 504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793), umuC (PRK03609)