myRT

myRT report for GCA_013328595.1_ASM1332859v1

Download annotations/find similar RTs

Seq: JABUGQ010000011.1 Pseudomonas aeruginosa strain LILL04 ctg_LILL04_11, whole genome shotgun sequence (271677 bp)
Overview 1 RT 1: 232343-236722 bp Neighborhood of RT #1 [232343, 236722] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 232343-233170 bp Feature: domain Description: ABC_phnC Location: 232373-233087 bp Feature: domain Description: ABC_phnC Location: 232373-233087 bp Feature: gene Location: 233513-234154 bp Feature: domain Description: DUF772 Location: 233663-233858 bp Feature: domain Description: DUF772 Location: 233663-233858 bp Feature: gene Location: 234543-235811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234756-235413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234756-23541 3 bp Feature: domain Description: GIIM Note: maturase Location: 235491-235713 bp Feature: domain Description: GIIM Note: maturase Location: 235491 -23571 3 bp Feature: gene Location: 235961-236359 bp Feature: gene Location: 236543-236722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: JABUGQ010000027.1 Pseudomonas aeruginosa strain LILL04 ctg_LILL04_27, whole genome shotgun sequence (64406 bp)
Overview 1 RT 1: 34435-37094 bp Neighborhood of RT #1 [34435, 37120] RVT-UG17 HipB Feature: gene Location: 34435-35799 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34663-35266 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34663-352 66 bp Feature: gene Location: 36328-36753 bp Feature: gene Location: 36839-37120 bp Feature: domain Description: HipB Location: 36860-37094 bp Feature: domain Description: HipB Location: 36860-37094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, HipB (COG1396)

Seq: JABUGQ010000009.1 Pseudomonas aeruginosa strain LILL04 ctg_LILL04_9, whole genome shotgun sequence (311998 bp)
Overview 1 RT 1: 227290-237295 bp 2 RT 2: 253553-262391 bp Neighborhood of RT #1 [227290, 237297] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [253553, 262420] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 227290-227529 bp Feature: domain Description: HTH_XRE Location: 227302-227446 bp Feature: domain Description: HTH_XRE Location: 2273 02-227446 bp Feature: gene Location: 227534-228703 bp Feature: domain Description: int Location: 227537-228554 bp Feature: domain Description: int Location: 22753 7-228554 bp Feature: gene Location: 228834-230519 bp Feature: domain Description: RVT_N Location: 228891-229131 bp Feature: domain Description: RVT_N Location: 228891-22913 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229179-229815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229179-229815 bp Feature: domain Description: GIIM Note: maturase Location: 229869-230100 bp Feature: domain Description: GIIM Note: maturase Location: 229869-23 0100 bp Feature: domain Description: HNH Note: nucleases Location: 230352-230490 bp Feature: domain Description: HNH Note: nucleases Location: 23 03 52-23 0490 bp Feature: gene Location: 231600-235337 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 231708-232365 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 23 1708-23 23 65 bp Feature: domain Description: PRK09776 Location: 232578-233049 bp Feature: domain Description: PRK09776 Location: 23 2578-23 3 049 bp Feature: domain Description: PAS Location: 233139-233631 bp Feature: domain Description: PAS Location: 23 3 13 9-23 3 63 1 bp Feature: domain Description: PRK10060 Location: 233640-235287 bp Feature: domain Description: PRK10060 Location: 23 3 640-23 5287 bp Feature: gene Location: 235444-237297 bp Feature: domain Description: PRK05658 Location: 235456-237295 bp Feature: domain Description: PRK05658 Location: 23 5456-23 7295 bp Feature: gene Location: 253553-254767 bp Feature: domain Description: PRK10770 Location: 253565-254759 bp Feature: domain Description: PRK10770 Location: 253 565-254759 bp Feature: gene Location: 254826-257615 bp Feature: domain Description: LptD Location: 255021-257601 bp Feature: domain Description: LptD Location: 255021-257601 bp Feature: gene Location: 257748-259460 bp Feature: domain Description: RVT_N Location: 257805-258048 bp Feature: domain Description: RVT_N Location: 257805-258048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258093-258729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258093 -258729 bp Feature: domain Description: YkfC Location: 258939-259089 bp Feature: domain Description: YkfC Location: 25893 9-259089 bp Feature: domain Description: HNH Note: nucleases Location: 259266-259404 bp Feature: domain Description: HNH Note: nucleases Location: 259266-259404 bp Feature: gene Location: 260733-261749 bp Feature: domain Description: COG3178 Location: 260736-261735 bp Feature: domain Description: COG3 178 Location: 26073 6-26173 5 bp Feature: gene Location: 261746-262420 bp Feature: domain Description: NTP_transferase_like_1 Location: 261752-262391 bp Feature: domain Description: NTP_transferase_like_1 Location: 261752-2623 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)