myRT

myRT report for GCA_013328615.1_ASM1332861v1

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Seq: JABUGR010000003.1 Pseudomonas aeruginosa strain HEGP08 ctg_HEGP08_3, whole genome shotgun sequence (514527 bp)
Overview 1 RT 1: 179454-184919 bp Neighborhood of RT #1 [179454, 184936] RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 179454-179732 bp Feature: gene Location: 180098-181108 bp Feature: gene Location: 181132-182034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181336-181948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 336-1 81 948 bp Feature: gene Location: 183002-183337 bp Feature: domain Description: TnpB_IS66 Location: 183020-183308 bp Feature: domain Description: TnpB_IS66 Location: 1 83020-1 83308 bp Feature: gene Location: 183401-184936 bp Feature: domain Description: LZ_Tnp_IS66 Location: 183542-183755 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 83542-1 83755 bp Feature: domain Description: zf-IS66 Location: 183776-183902 bp Feature: domain Description: zf-IS66 Location: 1 83776-1 83902 bp Feature: domain Description: DDE_Tnp_IS66 Location: 183944-184787 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 83944-1 84787 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 184808-184919 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 84808-1 8491 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: JABUGR010000006.1 Pseudomonas aeruginosa strain HEGP08 ctg_HEGP08_6, whole genome shotgun sequence (289163 bp)
Overview 1 RT 1: 83583-94253 bp Neighborhood of RT #1 [83583, 94318] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 83583-85436 bp Feature: domain Description: PRK05658 Location: 83595-85434 bp Feature: domain Description: PRK05658 Location: 83595-85434 bp Feature: gene Location: 85543-89280 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85651-86308 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 85651-86308 bp Feature: domain Description: PRK09776 Location: 86521-86992 bp Feature: domain Description: PRK09776 Location: 8652 1-86992 bp Feature: domain Description: PAS Location: 87037-87574 bp Feature: domain Description: PAS Location: 87037-87574 bp Feature: domain Description: PRK10060 Location: 87583-89230 bp Feature: domain Description: PRK10060 Location: 87583-892 30 bp Feature: gene Location: 90361-92046 bp Feature: RT Description: RVT_N Location: 90418-90658 bp Feature: RT Description: RVT_N Location: 90418-90658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90706-91342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90706-91342 bp Feature: domain Description: GIIM Note: maturase Location: 91396-91627 bp Feature: domain Description: GIIM Note: maturase Location: 91396-9162 7 bp Feature: domain Description: HNH Note: nucleases Location: 91879-92017 bp Feature: domain Description: HNH Note: nucleases Location: 91879-92 017 bp Feature: gene Location: 92769-93890 bp Feature: domain Description: COG3177 Location: 92787-93879 bp Feature: domain Description: COG3177 Location: 92 787-93879 bp Feature: gene Location: 93983-94318 bp Feature: domain Description: NERD Location: 94082-94253 bp Feature: domain Description: NERD Location: 94082 -942 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)