myRT

myRT report for GCA_013328655.1_ASM1332865v1

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Seq: JABUGT010000011.1 Pseudomonas aeruginosa strain CAE12 ctg_CAE12_11, whole genome shotgun sequence (183541 bp)
Overview 1 RT 1: 91574-97160 bp Neighborhood of RT #1 [91574, 97160] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 91574-92410 bp Feature: domain Description: HDOD Location: 91577-92405 bp Feature: domain Description: HDOD Location: 91 577-92405 bp Feature: gene Location: 92511-93455 bp Feature: domain Description: YgfZ Location: 92520-93420 bp Feature: domain Description: YgfZ Location: 92520-93420 bp Feature: gene Location: 95178-96497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95181-95757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 81 -95757 bp Feature: domain Description: YkfC Location: 95955-96111 bp Feature: domain Description: YkfC Location: 95955-961 1 1 bp Feature: domain Description: HNH Note: nucleases Location: 96294-96432 bp Feature: domain Description: HNH Note: nucleases Location: 96294-96432 bp Feature: gene Location: 96573-96827 bp Feature: domain Description: SdhE Location: 96579-96819 bp Feature: domain Description: SdhE Location: 96579-9681 9 bp Feature: gene Location: 96966-97160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: JABUGT010000040.1 Pseudomonas aeruginosa strain CAE12 ctg_CAE12_40, whole genome shotgun sequence (46177 bp)
Overview 1 RT 1: 34956-39252 bp Neighborhood of RT #1 [34956, 39335] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 34956-35135 bp Feature: gene Location: 35319-35717 bp Feature: gene Location: 35867-37135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36080-36737 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: domain Description: GIIM Note: maturase Location: 36815-37037 bp Feature: gene Location: 37524-38165 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: domain Description: DUF772 Location: 37674-37869 bp Feature: gene Location: 38508-39335 bp Feature: domain Description: ABC_phnC Location: 38538-39252 bp Feature: domain Description: ABC_phnC Location: 38538-392 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: JABUGT010000044.1 Pseudomonas aeruginosa strain CAE12 ctg_CAE12_44, whole genome shotgun sequence (36021 bp)
Overview 1 RT 1: 25832-34003 bp Neighborhood of RT #1 [25832, 34197] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25832-27703 bp Feature: domain Description: DUF262 Location: 25880-26648 bp Feature: domain Description: DUF262 Location: 25880-26648 bp Feature: gene Location: 27707-28816 bp Feature: domain Description: YeeA Location: 27902-28682 bp Feature: domain Description: YeeA Location: 27902-28682 bp Feature: gene Location: 29484-32504 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29979-30450 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29979-3 0450 bp Feature: gene Location: 32501-33058 bp Feature: gene Location: 33058-34197 bp Feature: domain Description: AAA_21 Location: 33130-33199 bp Feature: domain Description: AAA_21 Location: 3 3 13 0-3 3 199 bp Feature: domain Description: AAA_21 Location: 33673-34003 bp Feature: domain Description: AAA_21 Location: 3 3 673 -3 4003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: JABUGT010000006.1 Pseudomonas aeruginosa strain CAE12 ctg_CAE12_6, whole genome shotgun sequence (231201 bp)
Overview 1 RT 1: 49722-58563 bp 2 RT 2: 74827-85497 bp Neighborhood of RT #1 [49722, 58571] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74827, 85562] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49722-50396 bp Feature: domain Description: NTP_transferase_like_1 Location: 49728-50367 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 9728-50367 bp Feature: gene Location: 50393-51409 bp Feature: domain Description: COG3178 Location: 50396-51395 bp Feature: domain Description: COG3178 Location: 50396-51395 bp Feature: gene Location: 52682-54394 bp Feature: domain Description: RVT_N Location: 52739-52982 bp Feature: domain Description: RVT_N Location: 52739-52982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: domain Description: YkfC Location: 53873-54023 bp Feature: domain Description: YkfC Location: 53873-54 023 bp Feature: domain Description: HNH Note: nucleases Location: 54200-54338 bp Feature: domain Description: HNH Note: nucleases Location: 54 200-54 338 bp Feature: gene Location: 54527-57298 bp Feature: domain Description: LptD Location: 54722-57284 bp Feature: domain Description: LptD Location: 54 722-57284 bp Feature: gene Location: 57357-58571 bp Feature: domain Description: PRK10770 Location: 57369-58563 bp Feature: domain Description: PRK10770 Location: 57369-58563 bp Feature: gene Location: 74827-76680 bp Feature: domain Description: PRK05658 Location: 74839-76678 bp Feature: domain Description: PRK05658 Location: 74 839-76678 bp Feature: gene Location: 76787-80524 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76895-77552 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76895-77552 bp Feature: domain Description: PRK09776 Location: 77765-78236 bp Feature: domain Description: PRK09776 Location: 77765-78236 bp Feature: domain Description: PAS Location: 78293-78818 bp Feature: domain Description: PAS Location: 78293-78818 bp Feature: domain Description: PRK10060 Location: 78830-80474 bp Feature: domain Description: PRK10060 Location: 78830-804 74 bp Feature: gene Location: 81605-83290 bp Feature: domain Description: RVT_N Location: 81662-81902 bp Feature: domain Description: RVT_N Location: 81662-81902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81950-82586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81950-82586 bp Feature: domain Description: GIIM Note: maturase Location: 82640-82871 bp Feature: domain Description: GIIM Note: maturase Location: 8264 0-82871 bp Feature: domain Description: HNH Note: nucleases Location: 83123-83261 bp Feature: domain Description: HNH Note: nucleases Location: 83123-83261 bp Feature: gene Location: 84013-85134 bp Feature: domain Description: COG3177 Location: 84031-85123 bp Feature: domain Description: COG3177 Location: 84 031-85123 bp Feature: gene Location: 85347-85562 bp Feature: domain Description: NERD Location: 85374-85497 bp Feature: domain Description: NERD Location: 85374 -854 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)