myRT

myRT report for GCA_013331265.1_ASM1333126v1

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Seq: DUGS01000189.1 TPA_asm: Methanosarcina sp. isolate UBA10923 contig_10121, whole genome shotgun sequence (8278 bp)
Overview 1 RT 1: 569-3322 bp Neighborhood of RT #1 [569, 3351] RVT_N RVT-GII GIIM Transposase_mut Feature: gene Location: 569-1408 bp Feature: RT Description: RVT_N Location: 659-902 bp Feature: RT Description: RVT_N Location: 659-902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1 394 bp Feature: gene Location: 1677-2048 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 869 bp Feature: gene Location: 2224-3351 bp Feature: domain Description: Transposase_mut Location: 2266-3322 bp Feature: domain Description: Transposase_mut Location: 2266-3322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Transposase_mut (pfam00872), RVT_N (pfam13655), RVT-GII

Seq: DUGS01000023.1 TPA_asm: Methanosarcina sp. isolate UBA10923 contig_11245, whole genome shotgun sequence (20605 bp)
Overview 1 RT 1: 10554-17349 bp Neighborhood of RT #1 [10554, 17357] RMtype1_S_LdeBORF1052P-TRD2-CR2 RMtype1_S_LdeBORF1052P-TRD2-CR2 RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM COG5421 Feature: gene Location: 10554-11795 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 10665-11127 bp Feature: domain Description: RMtype1_S_LdeBORF1052 P-TRD2 -CR2 Location: 10665-1112 7 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 11166-11721 bp Feature: domain Description: RMtype1_S_LdeBORF1052 P-TRD2 -CR2 Location: 11166-1172 1 bp Feature: gene Location: 11792-12244 bp Feature: gene Location: 12257-13768 bp Feature: RT Description: RVT_N Location: 12326-12569 bp Feature: RT Description: RVT_N Location: 12 32 6-12 569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12614-13271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 614-132 71 bp Feature: domain Description: GIIM Note: maturase Location: 13325-13556 bp Feature: domain Description: GIIM Note: maturase Location: 1332 5-13556 bp Feature: gene Location: 13807-14016 bp Feature: gene Location: 14254-14388 bp Feature: gene Location: 14565-15893 bp Feature: RT Description: RVT_N Location: 14652-14895 bp Feature: RT Description: RVT_N Location: 14652 -14895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14940-15600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14940-15600 bp Feature: domain Description: GIIM Note: maturase Location: 15657-15885 bp Feature: domain Description: GIIM Note: maturase Location: 15657-15885 bp Feature: gene Location: 16045-16260 bp Feature: gene Location: 16581-17357 bp Feature: domain Description: COG5421 Location: 16632-17349 bp Feature: domain Description: COG542 1 Location: 16632 -17349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_LdeBORF1052P-TRD2-CR2 (cd17278), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5421 (Transposase )

Seq: DUGS01000104.1 TPA_asm: Methanosarcina sp. isolate UBA10923 contig_14432, whole genome shotgun sequence (8120 bp)
Overview 1 RT 1: 198-2864 bp Neighborhood of RT #1 [198, 2935] RVT-CRISPR-like GIIM PRiA4_ORF3 PRK04286 Feature: gene Location: 198-629 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 201-339 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 201-3 3 9 bp Feature: domain Description: GIIM Note: maturase Location: 474-615 bp Feature: domain Description: GIIM Note: maturase Location: 474-615 bp Feature: gene Location: 1280-1846 bp Feature: domain Description: PRiA4_ORF3 Location: 1301-1832 bp Feature: domain Description: PRiA4_ORF3 Location: 13 01-183 2 bp Feature: gene Location: 2024-2935 bp Feature: domain Description: PRK04286 Location: 2027-2864 bp Feature: domain Description: PRK04286 Location: 2027-2864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRiA4_ORF3 (pfam07929), RVT-CRISPR, GIIM (pfam08388), PRK04286 (hypothetical protein; Provisional)

Seq: DUGS01000095.1 TPA_asm: Methanosarcina sp. isolate UBA10923 contig_3473, whole genome shotgun sequence (6236 bp)
Overview 1 RT 1: 155-2941 bp Neighborhood of RT #1 [155, 2976] PRK04176 RVT-GII DUF5316 Feature: gene Location: 155-937 bp Feature: domain Description: PRK04176 Location: 158-929 bp Feature: domain Description: PRK04 176 Location: 158-929 bp Feature: gene Location: 1407-1619 bp Feature: gene Location: 1669-2376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-2299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-2299 bp Feature: gene Location: 2407-2547 bp Feature: gene Location: 2656-2976 bp Feature: domain Description: DUF5316 Location: 2737-2941 bp Feature: domain Description: DUF5316 Location: 2737-294 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04176 (ribulose-1,5-biphosphate synthetase; Provisional), RVT-GII, DUF5316 (pfam17247)