myRT

myRT report for GCA_013336635.1_ASM1333663v1

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Seq: JABUMM010000028.1 Burkholderia cepacia strain PC-17 PC17_unicycler2_contig_28, whole genome shotgun sequence (50893 bp)
Overview 1 RT 1: 22107-28322 bp Neighborhood of RT #1 [22107, 28354] GlxA COG3666 RVT-GII GIIM AcrR PRK07008 Feature: gene Location: 22107-22970 bp Feature: domain Description: GlxA Location: 22524-22962 bp Feature: domain Description: GlxA Location: 22524-22962 bp Feature: gene Location: 23060-23986 bp Feature: domain Description: COG3666 Location: 23102-23546 bp Feature: domain Description: COG3666 Location: 231 02-23546 bp Feature: gene Location: 24203-25450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24407-25067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24407-25067 bp Feature: domain Description: GIIM Note: maturase Location: 25148-25373 bp Feature: domain Description: GIIM Note: maturase Location: 251 48-25373 bp Feature: gene Location: 25746-26681 bp Feature: domain Description: AcrR Location: 26064-26478 bp Feature: domain Description: AcrR Location: 26064-26478 bp Feature: gene Location: 26594-28354 bp Feature: domain Description: PRK07008 Location: 26699-28322 bp Feature: domain Description: PRK07008 Location: 26699-28322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlxA (COG4977), COG3666 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), PRK07008 (long-chain-fatty-acid--CoA ligase; Validated)

Seq: JABUMM010000042.1 Burkholderia cepacia strain PC-17 PC17_unicycler2_contig_42, whole genome shotgun sequence (39896 bp)
Overview 1 RT 1: 31652-37589 bp Neighborhood of RT #1 [31652, 37589] DEXQc_UvrD DEXQc_UvrD Viral_helicase1 RVT-UG15 YifB Feature: gene Location: 31652-33055 bp Feature: domain Description: DEXQc_UvrD Location: 31688-31958 bp Feature: domain Description: DEXQc_UvrD Location: 31688-31958 bp Feature: domain Description: DEXQc_UvrD Location: 31967-32150 bp Feature: domain Description: DEXQc_UvrD Location: 31967-32 150 bp Feature: domain Description: Viral_helicase1 Location: 32927-33023 bp Feature: domain Description: Viral_helicase1 Location: 32 92 7-3302 3 bp Feature: gene Location: 33224-34045 bp Feature: gene Location: 34167-35822 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 34578-34992 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 34578-34992 bp Feature: gene Location: 36115-36684 bp Feature: domain Description: YifB Location: 36121-36667 bp Feature: domain Description: YifB Location: 3612 1-36667 bp Feature: gene Location: 37017-37589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXQc_UvrD (cd17932), Viral_helicase1 (pfam01443), RVT-UG15, YifB (COG0606)

Seq: JABUMM010000072.1 Burkholderia cepacia strain PC-17 PC17_unicycler2_contig_72, whole genome shotgun sequence (29710 bp)
Overview 1 RT 1: 3761-9034 bp Neighborhood of RT #1 [3761, 9057] FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 3761-4033 bp Feature: gene Location: 4658-5230 bp Feature: domain Description: FIN Location: 4835-5192 bp Feature: domain Description: FIN Location: 483 5-5192 bp Feature: gene Location: 5373-6833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5949-6585 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5949-6585 bp Feature: gene Location: 7162-7512 bp Feature: domain Description: Histone_HNS Location: 7204-7441 bp Feature: domain Description: Histone_HNS Location: 7204-7441 bp Feature: gene Location: 7822-9057 bp Feature: domain Description: MFS_MucK Location: 7900-9034 bp Feature: domain Description: MFS_MucK Location: 7900-903 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)