myRT

myRT report for GCA_013336645.1_ASM1333664v1

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Seq: JABUMQ010000132.1 Myxococcus sp. CA039A NODE_132_length_27761_cov_22.337, whole genome shotgun sequence (27761 bp)
Overview 1 RT 1: 20644-25586 bp Neighborhood of RT #1 [20644, 25586] COG4099 RVT-Retrons Feature: gene Location: 20644-21567 bp Feature: domain Description: COG4099 Location: 20722-21553 bp Feature: domain Description: COG4099 Location: 20722-21 553 bp Feature: gene Location: 22274-22597 bp Feature: gene Location: 22970-24298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23414-24068 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2341 4-24068 bp Feature: gene Location: 24470-25030 bp Feature: gene Location: 25023-25586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4099 (Predicted peptidase ), RVT-Retrons

Seq: JABUMQ010000275.1 Myxococcus sp. CA039A NODE_275_length_15550_cov_25.3344, whole genome shotgun sequence (15550 bp)
Overview 1 RT 1: 1251-12225 bp Neighborhood of RT #1 [1251, 12225] RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 rpt_mate_G_obs LRR_RI RVT-Retrons HEAT_2 HEAT HEAT_2 HEAT_2 Aldo_ket_red Feature: gene Location: 1251-5615 bp Feature: domain Description: RCC1 Location: 1461-1602 bp Feature: domain Description: RCC1 Location: 1461-1602 bp Feature: domain Description: RCC1 Location: 1620-1752 bp Feature: domain Description: RCC1 Location: 162 0-1752 bp Feature: domain Description: RCC1 Location: 1761-1902 bp Feature: domain Description: RCC1 Location: 1761-1902 bp Feature: domain Description: RCC1 Location: 1911-2052 bp Feature: domain Description: RCC1 Location: 1911-2 052 bp Feature: domain Description: RCC1 Location: 2061-2178 bp Feature: domain Description: RCC1 Location: 2 061-2 178 bp Feature: domain Description: RCC1 Location: 2211-2352 bp Feature: domain Description: RCC1 Location: 2 2 11-2 352 bp Feature: domain Description: RCC1 Location: 2361-2499 bp Feature: domain Description: RCC1 Location: 2 361-2 499 bp Feature: domain Description: RCC1 Location: 2511-2652 bp Feature: domain Description: RCC1 Location: 2 511-2 652 bp Feature: domain Description: RCC1 Location: 2661-2802 bp Feature: domain Description: RCC1 Location: 2 661-2 802 bp Feature: domain Description: RCC1 Location: 2811-2952 bp Feature: domain Description: RCC1 Location: 2 811-2 952 bp Feature: domain Description: RCC1 Location: 2961-3102 bp Feature: domain Description: RCC1 Location: 2 961-3102 bp Feature: domain Description: RCC1 Location: 3111-3252 bp Feature: domain Description: RCC1 Location: 3111-32 52 bp Feature: domain Description: RCC1 Location: 3261-3360 bp Feature: domain Description: RCC1 Location: 32 61-3360 bp Feature: domain Description: RCC1 Location: 3411-3549 bp Feature: domain Description: RCC1 Location: 3411-3549 bp Feature: domain Description: RCC1 Location: 3561-3702 bp Feature: domain Description: RCC1 Location: 3561-3702 bp Feature: domain Description: RCC1 Location: 3711-3852 bp Feature: domain Description: RCC1 Location: 3711-3852 bp Feature: domain Description: RCC1 Location: 3861-4002 bp Feature: domain Description: RCC1 Location: 3861-4002 bp Feature: domain Description: RCC1 Location: 4011-4152 bp Feature: domain Description: RCC1 Location: 4011-4152 bp Feature: domain Description: RCC1 Location: 4161-4302 bp Feature: domain Description: RCC1 Location: 4161-4302 bp Feature: domain Description: RCC1 Location: 4311-4452 bp Feature: domain Description: RCC1 Location: 4311-4452 bp Feature: domain Description: RCC1 Location: 4476-4614 bp Feature: domain Description: RCC1 Location: 4476-4614 bp Feature: domain Description: RCC1 Location: 4626-4767 bp Feature: domain Description: RCC1 Location: 462 6-4767 bp Feature: domain Description: RCC1 Location: 4776-4917 bp Feature: domain Description: RCC1 Location: 4776-4917 bp Feature: domain Description: RCC1 Location: 4926-5067 bp Feature: domain Description: RCC1 Location: 492 6-5067 bp Feature: domain Description: RCC1 Location: 5076-5217 bp Feature: domain Description: RCC1 Location: 5076-52 17 bp Feature: domain Description: RCC1 Location: 5226-5367 bp Feature: domain Description: RCC1 Location: 52 2 6-5367 bp Feature: domain Description: RCC1 Location: 5376-5511 bp Feature: domain Description: RCC1 Location: 5376-5511 bp Feature: domain Description: RCC1 Location: 5520-5607 bp Feature: domain Description: RCC1 Location: 552 0-5607 bp Feature: gene Location: 5685-6659 bp Feature: domain Description: rpt_mate_G_obs Location: 5697-5811 bp Feature: domain Description: rpt_mate_G_obs Location: 5697-5811 bp Feature: domain Description: LRR_RI Location: 6177-6591 bp Feature: domain Description: LRR_RI Location: 6177-6591 bp Feature: gene Location: 6656-8074 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7256-7847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72 56-7847 bp Feature: gene Location: 8290-11556 bp Feature: domain Description: HEAT_2 Location: 8398-8647 bp Feature: domain Description: HEAT_2 Location: 8398-8647 bp Feature: domain Description: HEAT Location: 8683-8746 bp Feature: domain Description: HEAT Location: 8683-8746 bp Feature: domain Description: HEAT_2 Location: 9403-9589 bp Feature: domain Description: HEAT_2 Location: 9403-9589 bp Feature: domain Description: HEAT_2 Location: 9730-10063 bp Feature: domain Description: HEAT_2 Location: 9730-10063 bp Feature: domain Description: Aldo_ket_red Location: 10681-11404 bp Feature: domain Description: Aldo_ket_red Location: 10681-11404 bp Feature: gene Location: 11593-12225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RCC1 (pfam00415), rpt_mate_G_obs (TIGR02996), LRR_RI (smart00368), RVT-Retrons, HEAT_2 (pfam13646), HEAT (sd00044), Aldo_ket_red (pfam00248)

Seq: JABUMQ010000363.1 Myxococcus sp. CA039A NODE_363_length_10457_cov_23.7846, whole genome shotgun sequence (10457 bp)
Overview 1 RT 1: 3699-10455 bp Neighborhood of RT #1 [3699, 10455] COG4584 COG4584 IstB_IS21 RVT-UG5 nitrilase Feature: gene Location: 3699-5324 bp Feature: domain Description: COG4584 Location: 3885-4722 bp Feature: domain Description: COG4584 Location: 3 885-4722 bp Feature: domain Description: COG4584 Location: 4767-5268 bp Feature: domain Description: COG4584 Location: 4767-5268 bp Feature: gene Location: 5502-6263 bp Feature: domain Description: IstB_IS21 Location: 5664-6192 bp Feature: domain Description: IstB_IS21 Location: 5664-6192 bp Feature: gene Location: 6854-9931 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 7316-7772 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 73 16-7772 bp Feature: domain Description: nitrilase Location: 9410-9767 bp Feature: domain Description: nitrilase Location: 9410-9767 bp Feature: gene Location: 10270-10455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), IstB_IS21 (pfam01695), RVT-UG5, nitrilase (cl11424)

Seq: JABUMQ010000047.1 Myxococcus sp. CA039A NODE_47_length_44437_cov_34.2777, whole genome shotgun sequence (44437 bp)
Overview 1 RT 1: 13492-19698 bp Neighborhood of RT #1 [13492, 19757] RVT-Retrons UPF0227 Feature: gene Location: 13492-15393 bp Feature: gene Location: 15390-17033 bp Feature: gene Location: 17199-18476 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17658-18270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17658-18270 bp Feature: gene Location: 18619-18969 bp Feature: gene Location: 19071-19757 bp Feature: domain Description: UPF0227 Location: 19119-19698 bp Feature: domain Description: UPF0227 Location: 19119-19698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UPF0227 (pfam05728)

Seq: JABUMQ010000062.1 Myxococcus sp. CA039A NODE_62_length_39687_cov_37.1036, whole genome shotgun sequence (39687 bp)
Overview 1 RT 1: 7289-20072 bp Neighborhood of RT #1 [7289, 20134] BetA BetA BetA DAP2 RVT-Retrons WD40 WD40 WD40 KOG0268 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 7289-8983 bp Feature: domain Description: BetA Location: 7463-7970 bp Feature: domain Description: BetA Location: 7463-7970 bp Feature: domain Description: BetA Location: 8111-8384 bp Feature: domain Description: BetA Location: 8111-8384 bp Feature: domain Description: BetA Location: 8549-8963 bp Feature: domain Description: BetA Location: 85 49-8963 bp Feature: gene Location: 8982-9887 bp Feature: domain Description: DAP2 Location: 9108-9684 bp Feature: domain Description: DAP2 Location: 9108-9684 bp Feature: gene Location: 9897-11354 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10455-11097 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1045 5 -11097 bp Feature: gene Location: 11763-13607 bp Feature: gene Location: 13604-20134 bp Feature: domain Description: WD40 Location: 13640-13964 bp Feature: domain Description: WD40 Location: 13640-13964 bp Feature: domain Description: WD40 Location: 13982-14084 bp Feature: domain Description: WD40 Location: 13982-14084 bp Feature: domain Description: WD40 Location: 14126-14213 bp Feature: domain Description: WD40 Location: 14126-14213 bp Feature: domain Description: KOG0268 Location: 14312-14552 bp Feature: domain Description: KOG0268 Location: 14312-145 5 2 bp Feature: domain Description: HEAT_2 Location: 14630-14840 bp Feature: domain Description: HEAT_2 Location: 14630-14840 bp Feature: domain Description: HEAT_2 Location: 15437-15686 bp Feature: domain Description: HEAT_2 Location: 15 437-15 686 bp Feature: domain Description: HEAT_2 Location: 15731-15884 bp Feature: domain Description: HEAT_2 Location: 15 731-15 884 bp Feature: domain Description: HEAT_2 Location: 15926-16130 bp Feature: domain Description: HEAT_2 Location: 15 926-16130 bp Feature: domain Description: HEAT Location: 16190-16487 bp Feature: domain Description: HEAT Location: 16190-16487 bp Feature: domain Description: HEAT_2 Location: 16541-16748 bp Feature: domain Description: HEAT_2 Location: 165 41-16748 bp Feature: domain Description: HEAT_2 Location: 17381-17567 bp Feature: domain Description: HEAT_2 Location: 17381-175 67 bp Feature: domain Description: HEAT_2 Location: 17615-17819 bp Feature: domain Description: HEAT_2 Location: 17615 -17819 bp Feature: domain Description: HEAT_2 Location: 17978-18218 bp Feature: domain Description: HEAT_2 Location: 17978-18218 bp Feature: domain Description: HEAT_2 Location: 18803-19046 bp Feature: domain Description: HEAT_2 Location: 18803-19046 bp Feature: domain Description: HEAT_2 Location: 19553-19778 bp Feature: domain Description: HEAT_2 Location: 195 5 3-19778 bp Feature: domain Description: HEAT_2 Location: 19919-20072 bp Feature: domain Description: HEAT_2 Location: 19919-20072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetA (COG2303), DAP2 (COG1506), RVT-Retrons, WD40 (smart00320), KOG0268 (KOG0268, Sof1-like rRNA processing protein (contains WD40 repeats) ), HEAT_2 (pfam13646), HEAT (sd00044)