myRT

myRT report for GCA_013336705.1_ASM1333670v1

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Seq: JABUMS010000002.1 Myxococcus sp. CA051A NODE_2_length_1176142_cov_23.5874, whole genome shotgun sequence (1176142 bp)
Overview 1 RT 1: 313589-319854 bp Neighborhood of RT #1 [313589, 319854] UPF0227 RVT-Retrons Feature: gene Location: 313589-314275 bp Feature: domain Description: UPF0227 Location: 313637-314216 bp Feature: domain Description: UPF0227 Location: 31 3637-31 421 6 bp Feature: gene Location: 314377-314727 bp Feature: gene Location: 314870-316147 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 315329-315941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 5329-31 5941 bp Feature: gene Location: 316313-317956 bp Feature: gene Location: 317953-319854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0227 (pfam05728), RVT-Retrons

Seq: JABUMS010000003.1 Myxococcus sp. CA051A NODE_3_length_877921_cov_22.5707, whole genome shotgun sequence (877921 bp)
Overview 1 RT 1: 47418-58392 bp Neighborhood of RT #1 [47418, 58392] RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 RCC1 rpt_mate_G_obs LRR_RI RVT-Retrons HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 Aldo_ket_red Feature: gene Location: 47418-51782 bp Feature: domain Description: RCC1 Location: 47628-47769 bp Feature: domain Description: RCC1 Location: 4762 8-47769 bp Feature: domain Description: RCC1 Location: 47787-47919 bp Feature: domain Description: RCC1 Location: 47787-47919 bp Feature: domain Description: RCC1 Location: 47928-48069 bp Feature: domain Description: RCC1 Location: 4792 8-48069 bp Feature: domain Description: RCC1 Location: 48078-48219 bp Feature: domain Description: RCC1 Location: 48078-482 19 bp Feature: domain Description: RCC1 Location: 48228-48345 bp Feature: domain Description: RCC1 Location: 482 2 8-48345 bp Feature: domain Description: RCC1 Location: 48378-48519 bp Feature: domain Description: RCC1 Location: 48378-48519 bp Feature: domain Description: RCC1 Location: 48528-48666 bp Feature: domain Description: RCC1 Location: 4852 8-48666 bp Feature: domain Description: RCC1 Location: 48678-48819 bp Feature: domain Description: RCC1 Location: 48678-48819 bp Feature: domain Description: RCC1 Location: 48828-48969 bp Feature: domain Description: RCC1 Location: 4882 8-48969 bp Feature: domain Description: RCC1 Location: 48978-49119 bp Feature: domain Description: RCC1 Location: 48978-49119 bp Feature: domain Description: RCC1 Location: 49128-49269 bp Feature: domain Description: RCC1 Location: 4912 8-492 69 bp Feature: domain Description: RCC1 Location: 49278-49419 bp Feature: domain Description: RCC1 Location: 492 78-49419 bp Feature: domain Description: RCC1 Location: 49428-49527 bp Feature: domain Description: RCC1 Location: 4942 8-4952 7 bp Feature: domain Description: RCC1 Location: 49578-49716 bp Feature: domain Description: RCC1 Location: 49578-49716 bp Feature: domain Description: RCC1 Location: 49728-49869 bp Feature: domain Description: RCC1 Location: 4972 8-49869 bp Feature: domain Description: RCC1 Location: 49878-50019 bp Feature: domain Description: RCC1 Location: 49878-50019 bp Feature: domain Description: RCC1 Location: 50028-50169 bp Feature: domain Description: RCC1 Location: 5002 8-50169 bp Feature: domain Description: RCC1 Location: 50178-50319 bp Feature: domain Description: RCC1 Location: 50178-50319 bp Feature: domain Description: RCC1 Location: 50328-50469 bp Feature: domain Description: RCC1 Location: 5032 8-50469 bp Feature: domain Description: RCC1 Location: 50478-50619 bp Feature: domain Description: RCC1 Location: 50478-50619 bp Feature: domain Description: RCC1 Location: 50643-50781 bp Feature: domain Description: RCC1 Location: 50643-50781 bp Feature: domain Description: RCC1 Location: 50793-50934 bp Feature: domain Description: RCC1 Location: 50793-50934 bp Feature: domain Description: RCC1 Location: 50943-51084 bp Feature: domain Description: RCC1 Location: 50943-51084 bp Feature: domain Description: RCC1 Location: 51093-51234 bp Feature: domain Description: RCC1 Location: 51093-512 34 bp Feature: domain Description: RCC1 Location: 51243-51384 bp Feature: domain Description: RCC1 Location: 512 43-51384 bp Feature: domain Description: RCC1 Location: 51393-51534 bp Feature: domain Description: RCC1 Location: 51393-51534 bp Feature: domain Description: RCC1 Location: 51543-51678 bp Feature: domain Description: RCC1 Location: 51543-51678 bp Feature: domain Description: RCC1 Location: 51687-51774 bp Feature: domain Description: RCC1 Location: 51687-51774 bp Feature: gene Location: 51852-52826 bp Feature: domain Description: rpt_mate_G_obs Location: 51864-51978 bp Feature: domain Description: rpt_mate_G_obs Location: 51864-51978 bp Feature: domain Description: LRR_RI Location: 52344-52758 bp Feature: domain Description: LRR_RI Location: 52 344-52 758 bp Feature: gene Location: 52823-54241 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53423-54014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5342 3-54014 bp Feature: gene Location: 54457-57723 bp Feature: domain Description: HEAT_2 Location: 54565-54814 bp Feature: domain Description: HEAT_2 Location: 54565-54814 bp Feature: domain Description: HEAT Location: 54850-54913 bp Feature: domain Description: HEAT Location: 54850-54913 bp Feature: domain Description: HEAT_2 Location: 55570-55747 bp Feature: domain Description: HEAT_2 Location: 55570-55747 bp Feature: domain Description: HEAT_2 Location: 55858-56044 bp Feature: domain Description: HEAT_2 Location: 55858-56044 bp Feature: domain Description: HEAT_2 Location: 56191-56380 bp Feature: domain Description: HEAT_2 Location: 56191-56380 bp Feature: domain Description: Aldo_ket_red Location: 56848-57580 bp Feature: domain Description: Aldo_ket_red Location: 56848-57580 bp Feature: gene Location: 57760-58392 bp Sorry, 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Associated domains:myRT RCC1 (pfam00415), rpt_mate_G_obs (TIGR02996), LRR_RI (smart00368), RVT-Retrons, HEAT_2 (pfam13646), HEAT (sd00044), Aldo_ket_red (pfam00248)

Seq: JABUMS010000004.1 Myxococcus sp. CA051A NODE_4_length_721568_cov_20.2849, whole genome shotgun sequence (721568 bp)
Overview 1 RT 1: 477740-482675 bp Neighborhood of RT #1 [477740, 482689] RVT-Retrons COG4099 Feature: gene Location: 477740-478303 bp Feature: gene Location: 478296-478856 bp Feature: gene Location: 479028-480356 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 479472-480126 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 479472-480126 bp Feature: gene Location: 480729-481052 bp Feature: gene Location: 481766-482689 bp Feature: domain Description: COG4099 Location: 481826-482675 bp Feature: domain Description: COG4099 Location: 481826-482675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG4099 (Predicted peptidase )

Seq: JABUMS010000007.1 Myxococcus sp. CA051A NODE_7_length_562936_cov_24.4619, whole genome shotgun sequence (562936 bp)
Overview 1 RT 1: 127622-140447 bp Neighborhood of RT #1 [127622, 140467] WD40 WD40 WD40 KOG0268 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons DAP2 BetA BetA BetA Feature: gene Location: 127622-134152 bp Feature: domain Description: WD40 Location: 127886-127982 bp Feature: domain Description: WD4 0 Location: 127886-127982 bp Feature: domain Description: WD40 Location: 128000-128102 bp Feature: domain Description: WD4 0 Location: 128000-128102 bp Feature: domain Description: WD40 Location: 128144-128231 bp Feature: domain Description: WD4 0 Location: 12814 4 -128231 bp Feature: domain Description: KOG0268 Location: 128330-128573 bp Feature: domain Description: KOG0268 Location: 128330-128573 bp Feature: domain Description: HEAT_2 Location: 128648-128858 bp Feature: domain Description: HEAT_2 Location: 12864 8-128858 bp Feature: domain Description: HEAT_2 Location: 129455-129704 bp Feature: domain Description: HEAT_2 Location: 1294 55-129704 bp Feature: domain Description: HEAT_2 Location: 129749-129902 bp Feature: domain Description: HEAT_2 Location: 12974 9-129902 bp Feature: domain Description: HEAT_2 Location: 129944-130148 bp Feature: domain Description: HEAT_2 Location: 12994 4 -13014 8 bp Feature: domain Description: HEAT Location: 130208-130505 bp Feature: domain Description: HEAT Location: 130208-130505 bp Feature: domain Description: HEAT_2 Location: 130559-130766 bp Feature: domain Description: HEAT_2 Location: 130559-130766 bp Feature: domain Description: HEAT_2 Location: 131399-131585 bp Feature: domain Description: HEAT_2 Location: 131399-131585 bp Feature: domain Description: HEAT_2 Location: 131633-131837 bp Feature: domain Description: HEAT_2 Location: 131633-131837 bp Feature: domain Description: HEAT_2 Location: 132002-132236 bp Feature: domain Description: HEAT_2 Location: 132002-132236 bp Feature: domain Description: HEAT_2 Location: 132821-133064 bp Feature: domain Description: HEAT_2 Location: 132821-133064 bp Feature: domain Description: HEAT_2 Location: 133571-133796 bp Feature: domain Description: HEAT_2 Location: 133571-133796 bp Feature: domain Description: HEAT_2 Location: 133937-134090 bp Feature: domain Description: HEAT_2 Location: 133937-134 090 bp Feature: gene Location: 134149-135993 bp Feature: gene Location: 136402-137859 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136960-137602 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 136960-137602 bp Feature: gene Location: 137869-138774 bp Feature: domain Description: DAP2 Location: 138001-138571 bp Feature: domain Description: DAP2 Location: 138001-138571 bp Feature: gene Location: 138773-140467 bp Feature: domain Description: BetA Location: 138947-139454 bp Feature: domain Description: BetA Location: 13894 7-1394 54 bp Feature: domain Description: BetA Location: 139595-139868 bp Feature: domain Description: BetA Location: 139595-139868 bp Feature: domain Description: BetA Location: 140033-140447 bp Feature: domain Description: BetA Location: 14 0033-14 04 4 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), KOG0268 (KOG0268, Sof1-like rRNA processing protein (contains WD40 repeats) ), HEAT_2 (pfam13646), HEAT (sd00044), RVT-Retrons, DAP2 (COG1506), BetA (COG2303)