myRT

myRT report for GCA_013336895.1_ASM1333689v1

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Seq: JAAMQG010000001.1 Citrobacter freundii strain YDC876, whole genome shotgun sequence (5231895 bp)
Overview 1 RT 1: 70171-76650 bp 2 RT 2: 1439237-1444309 bp 3 RT 3: 1756172-1760527 bp 4 RT 4: 2442875-2446795 bp 5 RT 5: 2646863-2651923 bp 6 RT 6: 3747232-3752827 bp 7 RT 7: 4671499-4675723 bp 8 RT 8: 4866520-4871261 bp Neighborhood of RT #1 [70171, 76652] SymE_toxin arc_metj RVT-UG8 RVT-UG3 PRK11462 Neighborhood of RT #2 [1439237, 1444309] DEDD_Tnp_IS110 Transposase_20 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1756172, 1760527] ZnMc_MMP_like_1 PHA02517 RVT-GII GIIM Neighborhood of RT #4 [2442875, 2446803] InsE PHA02517 RVT-GII GIIM PHA02517 COG4453 Neighborhood of RT #5 [2646863, 2651923] TIGR02646 COG3950 RVT-Retrons DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #6 [3747232, 3752892] RVT-Retrons PRK09692 RVT-GII GIIM PHA02517 Neighborhood of RT #7 [4671499, 4675788] YjeJ PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #8 [4866520, 4871261] DEDD_Tnp_IS110 Transposase_20 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 70171-70461 bp Feature: domain Description: SymE_toxin Location: 70222-70363 bp Feature: domain Description: SymE_toxin Location: 70222-70363 bp Feature: gene Location: 70588-70779 bp Feature: domain Description: arc_metj Location: 70651-70759 bp Feature: domain Description: arc_metj Location: 70651 -70759 bp Feature: gene Location: 70913-72883 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 71426-71870 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 71 426-71 870 bp Feature: gene Location: 73445-74104 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 73733-74084 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 73733-74084 bp Feature: gene Location: 74858-75037 bp Feature: gene Location: 75270-76652 bp Feature: domain Description: PRK11462 Location: 75273-76650 bp Feature: domain Description: PRK1 1 462 Location: 75273-76650 bp Feature: gene Location: 1439237-1440595 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1439300-1439732 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 439300-1 439732 bp Feature: domain Description: Transposase_20 Location: 1440128-1440377 bp Feature: domain Description: Transposase_20 Location: 1 4401 28-1 440377 bp Feature: gene Location: 1440474-1441112 bp Feature: domain Description: PHA02517 Location: 1440711-1441047 bp Feature: domain Description: PHA0251 7 Location: 1 44071 1 -1 441 047 bp Feature: gene Location: 1441704-1443227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1441977-1442709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 441 977-1 442709 bp Feature: domain Description: GIIM Note: maturase Location: 1442784-1442982 bp Feature: domain Description: GIIM Note: maturase Location: 1 442784-1 442982 bp Feature: gene Location: 1443392-1443796 bp Feature: domain Description: PHA02517 Location: 1443395-1443776 bp Feature: domain Description: PHA0251 7 Location: 1 443395-1 443776 bp Feature: gene Location: 1443938-1444309 bp Feature: gene Location: 1756172-1757152 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 1756592-1757102 bp Feature: domain Description: ZnMc_MMP_like_1 Location: 1 756592-1 7571 02 bp Feature: gene Location: 1757448-1757780 bp Feature: domain Description: PHA02517 Location: 1757454-1757769 bp Feature: domain Description: PHA0251 7 Location: 1 757454-1 757769 bp Feature: gene Location: 1757985-1759508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1758258-1758990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 758258-1 758990 bp Feature: domain Description: GIIM Note: maturase Location: 1759065-1759263 bp Feature: domain Description: GIIM Note: maturase Location: 1 759065-1 759263 bp Feature: gene Location: 1759802-1760173 bp Feature: gene Location: 1760303-1760527 bp Feature: gene Location: 2442875-2443159 bp Feature: domain Description: InsE Location: 2442887-2443148 bp Feature: domain Description: InsE Location: 2442887-24431 48 bp Feature: gene Location: 2443201-2443626 bp Feature: domain Description: PHA02517 Location: 2443222-2443561 bp Feature: domain Description: PHA0251 7 Location: 2443222-2443561 bp Feature: gene Location: 2444218-2445741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2444491-2445223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2444491 -2445223 bp Feature: domain Description: GIIM Note: maturase Location: 2445298-2445496 bp Feature: domain Description: GIIM Note: maturase Location: 2445298-2445496 bp Feature: gene Location: 2445864-2446319 bp Feature: domain Description: PHA02517 Location: 2445867-2446275 bp Feature: domain Description: PHA0251 7 Location: 2445867-2446275 bp Feature: gene Location: 2446534-2446803 bp Feature: domain Description: COG4453 Location: 2446540-2446795 bp Feature: domain Description: COG4453 Location: 2446540-2446795 bp Feature: gene Location: 2646863-2647594 bp Feature: domain Description: TIGR02646 Location: 2646962-2647472 bp Feature: domain Description: TIGR02646 Location: 2646962-2647472 bp Feature: gene Location: 2647594-2649219 bp Feature: domain Description: COG3950 Location: 2647768-2649121 bp Feature: domain Description: COG3950 Location: 2647768-26491 21 bp Feature: gene Location: 2649224-2650156 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2649323-2649920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2649323-2649920 bp Feature: gene Location: 2650507-2651745 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2650540-2651002 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2650540-2651 002 bp Feature: domain Description: Transposase_20 Location: 2651332-2651584 bp Feature: domain Description: Transposase_20 Location: 2651 332-2651 584 bp Feature: gene Location: 2651759-2651923 bp Feature: gene Location: 3747232-3747408 bp Feature: gene Location: 3747511-3747714 bp Feature: gene Location: 3747733-3748692 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3747910-3748435 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 374791 0-3748435 bp Feature: gene Location: 3749011-3749577 bp Feature: domain Description: PRK09692 Location: 3749014-3749566 bp Feature: domain Description: PRK09692 Location: 374901 4-3749566 bp Feature: gene Location: 3749699-3749842 bp Feature: gene Location: 3750139-3751662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3750412-3751144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375041 2-3751 1 44 bp Feature: domain Description: GIIM Note: maturase Location: 3751219-3751417 bp Feature: domain Description: GIIM Note: maturase Location: 3751 21 9-3751 41 7 bp Feature: gene Location: 3751616-3752041 bp Feature: gene Location: 3752254-3752892 bp Feature: domain Description: PHA02517 Location: 3752491-3752827 bp Feature: domain Description: PHA0251 7 Location: 3752491 -3752827 bp Feature: gene Location: 4671499-4672362 bp Feature: domain Description: YjeJ Location: 4671502-4672345 bp Feature: domain Description: YjeJ Location: 4671 502-4672345 bp Feature: gene Location: 4672466-4672870 bp Feature: domain Description: PHA02517 Location: 4672469-4672850 bp Feature: domain Description: PHA0251 7 Location: 4672469-4672850 bp Feature: gene Location: 4673035-4674558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4673308-4674040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4673308-4674040 bp Feature: domain Description: GIIM Note: maturase Location: 4674115-4674313 bp Feature: domain Description: GIIM Note: maturase Location: 46741 1 5-467431 3 bp Feature: gene Location: 4674512-4674937 bp Feature: gene Location: 4675150-4675788 bp Feature: domain Description: PHA02517 Location: 4675387-4675723 bp Feature: domain Description: PHA0251 7 Location: 4675387-4675723 bp Feature: gene Location: 4866520-4867878 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4866583-4867015 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 4866583-486701 5 bp Feature: domain Description: Transposase_20 Location: 4867411-4867660 bp Feature: domain Description: Transposase_20 Location: 486741 1 -4867660 bp Feature: gene Location: 4867757-4868395 bp Feature: domain Description: PHA02517 Location: 4867994-4868330 bp Feature: domain Description: PHA0251 7 Location: 4867994-4868330 bp Feature: gene Location: 4868987-4870510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4869260-4869992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4869260-4869992 bp Feature: domain Description: GIIM Note: maturase Location: 4870067-4870265 bp Feature: domain Description: GIIM Note: maturase Location: 4870067-4870265 bp Feature: gene Location: 4870675-4871079 bp Feature: domain Description: PHA02517 Location: 4870678-4871059 bp Feature: domain Description: PHA0251 7 Location: 4870678-4871 059 bp Feature: gene Location: 4871100-4871261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SymE_toxin (pfam08845), arc_metj (LOAD_arc_metj), RVT-UG8, RVT-UG3, PRK11462 (putative transporter; Provisional), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)
ZnMc_MMP_like_1 (cd04279), InsE (COG2963), COG4453 (Uncharacterized conserved protein, DUF1778 family ), TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK09692 (Integrase; provisional), YjeJ (pfam15922)