myRT

myRT report for GCA_013337145.1_ASM1333714v1

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Seq: SGWD01000019.1 Enterobacter sp. JMULE2 Joined_contig_10, whole genome shotgun sequence (99960 bp)
Overview 1 RT 1: 84432-90101 bp Neighborhood of RT #1 [84432, 90130] PRK13742 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Feature: gene Location: 84432-85187 bp Feature: domain Description: PRK13742 Location: 84435-85167 bp Feature: domain Description: PRK1 3742 Location: 84435-851 67 bp Feature: gene Location: 85488-86246 bp Feature: gene Location: 86318-87757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86678-87365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86678-87365 bp Feature: gene Location: 88195-89733 bp Feature: domain Description: LZ_Tnp_IS66 Location: 88312-88525 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8831 2-88525 bp Feature: domain Description: zf-IS66 Location: 88546-88678 bp Feature: domain Description: zf-IS66 Location: 88546-88678 bp Feature: domain Description: DDE_Tnp_IS66 Location: 88723-89578 bp Feature: domain Description: DDE_Tnp_IS66 Location: 88723-89578 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 89599-89710 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 89599-8971 0 bp Feature: gene Location: 89783-90130 bp Feature: domain Description: TnpB_IS66 Location: 89810-90101 bp Feature: domain Description: TnpB_IS66 Location: 8981 0-901 01 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13742 (replication initiation protein RepE), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717)

Seq: SGWD01000013.1 Enterobacter sp. JMULE2 Joined_contig_4, whole genome shotgun sequence (613519 bp)
Overview 1 RT 1: 19346-25301 bp Neighborhood of RT #1 [19346, 25360] OmpA VI_effect_Hcp1 RVT-GII GIIM VI_ClpV1 VI_ClpV1 Feature: gene Location: 19346-20176 bp Feature: domain Description: OmpA Location: 19697-20108 bp Feature: domain Description: OmpA Location: 19697-2 0108 bp Feature: gene Location: 20192-20683 bp Feature: domain Description: VI_effect_Hcp1 Location: 20198-20672 bp Feature: domain Description: VI_effect_Hcp1 Location: 2 0198-2 0672 bp Feature: gene Location: 21127-22485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21454-22069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1454-2 2 069 bp Feature: domain Description: GIIM Note: maturase Location: 22120-22336 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 12 0-2 2 336 bp Feature: gene Location: 22716-25040 bp Feature: domain Description: VI_ClpV1 Location: 22749-24975 bp Feature: domain Description: VI_ClpV1 Location: 2 2 749-2 4975 bp Feature: gene Location: 25067-25360 bp Feature: domain Description: VI_ClpV1 Location: 25070-25301 bp Feature: domain Description: VI_ClpV1 Location: 2 5070-2 5301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpA (pfam00691), VI_effect_Hcp1 (TIGR03344), RVT-GII, GIIM (pfam08388), VI_ClpV1 (TIGR03345)

Seq: SGWD01000015.1 Enterobacter sp. JMULE2 Joined_contig_6, whole genome shotgun sequence (421445 bp)
Overview 1 RT 1: 19585-24928 bp 2 RT 2: 211379-215560 bp Neighborhood of RT #1 [19585, 24954] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII AAA_15 TOPRIM_OLD PRK13757 Neighborhood of RT #2 [211379, 215560] RVT-GII AAA_15 Feature: gene Location: 19585-21123 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19702-19915 bp Feature: domain Description: LZ_Tnp_IS66 Location: 19702-19915 bp Feature: domain Description: zf-IS66 Location: 19936-20068 bp Feature: domain Description: zf-IS66 Location: 1993 6-20068 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20113-20968 bp Feature: domain Description: DDE_Tnp_IS66 Location: 20113 -20968 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20989-21100 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20989-21100 bp Feature: gene Location: 21367-21546 bp Feature: gene Location: 21561-23000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21921-22608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21921-22608 bp Feature: gene Location: 23241-24128 bp Feature: domain Description: AAA_15 Location: 23262-23421 bp Feature: domain Description: AAA_15 Location: 23 262-23 421 bp Feature: domain Description: TOPRIM_OLD Location: 23571-23829 bp Feature: domain Description: TOPRIM_OLD Location: 23 571-23 829 bp Feature: gene Location: 24277-24954 bp Feature: domain Description: PRK13757 Location: 24280-24928 bp Feature: domain Description: PRK13 757 Location: 24280-24928 bp Feature: gene Location: 211379-211792 bp Feature: gene Location: 211984-212352 bp Feature: gene Location: 212634-214073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212994-213681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212994-213 681 bp Feature: gene Location: 214421-215236 bp Feature: domain Description: AAA_15 Location: 214424-215171 bp Feature: domain Description: AAA_15 Location: 214424-215171 bp Feature: gene Location: 215363-215560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, AAA_15 (pfam13175), TOPRIM_OLD (cd01026), PRK13757 (type A chloramphenicol O-acetyltransferase)

Seq: SGWD01000016.1 Enterobacter sp. JMULE2 Joined_contig_7, whole genome shotgun sequence (439410 bp)
Overview 1 RT 1: 334519-339950 bp Neighborhood of RT #1 [334519, 339955] Methyltransf_11 rve RVT-GII PRK06846 Feature: gene Location: 334519-335253 bp Feature: domain Description: Methyltransf_11 Location: 334660-334942 bp Feature: domain Description: Methyltransf_11 Location: 334 660-334 94 2 bp Feature: gene Location: 335416-336297 bp Feature: domain Description: rve Location: 335563-335917 bp Feature: domain Description: rve Location: 335563-335917 bp Feature: gene Location: 336418-337842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336778-337465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336778-3374 65 bp Feature: gene Location: 338190-338417 bp Feature: gene Location: 338576-339955 bp Feature: domain Description: PRK06846 Location: 338726-339950 bp Feature: domain Description: PRK0684 6 Location: 338726-339950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_11 (pfam08241), rve (pfam00665), RVT-GII, PRK06846 (putative deaminase; Validated)

Seq: SGWD01000018.1 Enterobacter sp. JMULE2 Joined_contig_9, whole genome shotgun sequence (486958 bp)
Overview 1 RT 1: 98291-110484 bp 2 RT 2: 231863-234792 bp Neighborhood of RT #1 [98291, 110484] HigA HigB RVT-GII GIIM PinE DUF4158 DDE_Tnp_Tn3 RVT-GII GIIM Neighborhood of RT #2 [231863, 234792] TAS_TAS_TAS_TIGR02293 RVT_N RVT-GII YkfC HNHc Feature: gene Location: 98291-98650 bp Feature: domain Description: HigA Location: 98297-98642 bp Feature: domain Description: HigA Location: 98297-98642 bp Feature: gene Location: 98654-98956 bp Feature: domain Description: HigB Location: 98657-98939 bp Feature: domain Description: HigB Location: 9865 7-98939 bp Feature: gene Location: 99513-100844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99798-100485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99798-100485 bp Feature: domain Description: GIIM Note: maturase Location: 100602-100773 bp Feature: domain Description: GIIM Note: maturase Location: 100602-100773 bp Feature: gene Location: 100993-101304 bp Feature: gene Location: 101477-102298 bp Feature: gene Location: 103960-104520 bp Feature: domain Description: PinE Location: 103975-104512 bp Feature: domain Description: PinE Location: 103975 -1045 12 bp Feature: gene Location: 104570-107578 bp Feature: domain Description: DUF4158 Location: 104585-105086 bp Feature: domain Description: DUF415 8 Location: 1045 85 -105 086 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 106328-107495 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 106328-107495 bp Feature: gene Location: 108137-109468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108422-109109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108422-109109 bp Feature: domain Description: GIIM Note: maturase Location: 109226-109397 bp Feature: domain Description: GIIM Note: maturase Location: 109226-109397 bp Feature: gene Location: 109839-109985 bp Feature: gene Location: 110086-110484 bp Feature: gene Location: 231863-232312 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 231917-232310 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 231917-232310 bp Feature: gene Location: 232358-232516 bp Feature: gene Location: 232603-234276 bp Feature: RT Description: RVT_N Location: 232663-232903 bp Feature: RT Description: RVT_N Location: 232663-232903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232951-233593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23295 1-2335 93 bp Feature: domain Description: YkfC Location: 233722-233899 bp Feature: domain Description: YkfC Location: 233722-233899 bp Feature: domain Description: HNHc Note: nucleases Location: 234091-234253 bp Feature: domain Description: HNHc Note: nucleases Location: 234091-23425 3 bp Feature: gene Location: 234295-234450 bp Feature: gene Location: 234643-234792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigA (COG5499), HigB (COG4680), RVT-GII, GIIM (pfam08388), PinE (COG1961), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), TAS_TAS_TAS_TIGR02293, RVT_N (pfam13655), YkfC (COG3344)
HNHc (smart00507)