myRT

myRT report for GCA_013337485.1_ASM1333748v1

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Seq: SUQI01000011.1 Pseudomonas sp. UMA601 UMA601_11, whole genome shotgun sequence (144646 bp)
Overview 1 RT 1: 124640-133493 bp Neighborhood of RT #1 [124640, 133519] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 124640-125896 bp Feature: domain Description: PRK10770 Location: 124694-125888 bp Feature: domain Description: PRK1 0770 Location: 1 24694-1 25888 bp Feature: gene Location: 125913-128714 bp Feature: domain Description: LptD Location: 126282-128700 bp Feature: domain Description: LptD Location: 1 26282-1 28700 bp Feature: gene Location: 128847-130559 bp Feature: domain Description: RVT_N Location: 128904-129147 bp Feature: domain Description: RVT_N Location: 1 28904-1 291 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129192-129828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 291 92-1 29828 bp Feature: domain Description: YkfC Location: 130038-130188 bp Feature: domain Description: YkfC Location: 1 30038-1 301 88 bp Feature: domain Description: HNH Note: nucleases Location: 130365-130503 bp Feature: domain Description: HNH Note: nucleases Location: 1 30365-1 30503 bp Feature: gene Location: 131832-132848 bp Feature: domain Description: COG3178 Location: 131838-132831 bp Feature: domain Description: COG31 78 Location: 1 31 838-1 32831 bp Feature: gene Location: 132845-133519 bp Feature: domain Description: NTP_transferase_like_1 Location: 132851-133493 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 32851 -1 33493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: SUQI01000020.1 Pseudomonas sp. UMA601 UMA601_20, whole genome shotgun sequence (111294 bp)
Overview 1 RT 1: 42728-49190 bp Neighborhood of RT #1 [42728, 49204] AAA_15 TOPRIM_OLD RVT-UG17 SLATT_5 HEPN_RiboL-PSP Feature: gene Location: 42728-45145 bp Feature: domain Description: AAA_15 Location: 42731-44051 bp Feature: domain Description: AAA_15 Location: 42 731-44051 bp Feature: domain Description: TOPRIM_OLD Location: 44216-44462 bp Feature: domain Description: TOPRIM_OLD Location: 442 16-44462 bp Feature: gene Location: 45492-46298 bp Feature: gene Location: 46470-47834 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 46698-47301 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 46698-47301 bp Feature: gene Location: 47831-48385 bp Feature: domain Description: SLATT_5 Location: 47837-48356 bp Feature: domain Description: SLATT_5 Location: 47837-48356 bp Feature: gene Location: 48791-49204 bp Feature: domain Description: HEPN_RiboL-PSP Location: 48794-49190 bp Feature: domain Description: HEPN_RiboL-PSP Location: 48794-49190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-UG17, SLATT_5 (pfam18160), HEPN_RiboL-PSP (pfam18735)

Seq: SUQI01000006.1 Pseudomonas sp. UMA601 UMA601_6, whole genome shotgun sequence (211576 bp)
Overview 1 RT 1: 41230-44437 bp Neighborhood of RT #1 [41230, 44451] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 41230-41631 bp Feature: gene Location: 41642-42076 bp Feature: gene Location: 42073-43374 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42457-43141 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42457-43 141 bp Feature: gene Location: 43438-43833 bp Feature: domain Description: Avd_like Location: 43504-43810 bp Feature: domain Description: Avd_like Location: 43 504-43 810 bp Feature: gene Location: 43852-44451 bp Feature: domain Description: DUF1566 Location: 44281-44437 bp Feature: domain Description: DUF1566 Location: 44281-4443 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)